Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016441.1-P | Field mustard | cytosol | 97.12 | 97.12 |
| CDY29486 | Canola | cytosol | 93.42 | 93.03 |
| CDY04591 | Canola | cytosol | 92.59 | 92.21 |
| CDY01340 | Canola | cytosol | 88.07 | 91.85 |
| CDX96610 | Canola | cytosol | 97.12 | 89.39 |
| CDY00356 | Canola | cytosol | 88.48 | 88.11 |
| CDX87583 | Canola | nucleus | 80.25 | 81.93 |
| CDX88300 | Canola | nucleus | 79.42 | 81.43 |
| CDX68093 | Canola | nucleus | 79.84 | 81.17 |
| CDX85958 | Canola | nucleus | 79.84 | 77.6 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 53.91 | 71.2 |
| PGSC0003DMT400025721 | Potato | plastid | 47.74 | 66.67 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 54.32 | 65.35 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 60.49 | 64.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.09 | 63.86 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 55.97 | 56.2 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 55.97 | 56.2 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 55.14 | 55.37 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 54.32 | 55.23 |
| Os06t0624900-01 | Rice | cytosol | 57.2 | 54.94 |
| CDX71409 | Canola | nucleus | 42.39 | 54.79 |
| CDY01500 | Canola | nucleus | 47.33 | 53.74 |
| OQU76729 | Sorghum | cytosol, plastid | 56.38 | 53.52 |
| CDY04518 | Canola | nucleus | 41.56 | 53.44 |
| CDX90437 | Canola | nucleus | 46.09 | 52.34 |
| CDY30518 | Canola | cytosol | 40.33 | 51.31 |
| CDX76551 | Canola | nucleus | 46.91 | 50.89 |
| CDY08880 | Canola | nucleus | 46.91 | 50.89 |
| CDX78810 | Canola | nucleus | 46.91 | 50.22 |
| CDY44504 | Canola | nucleus | 46.91 | 50.22 |
| CDY72135 | Canola | cytosol, nucleus | 40.74 | 46.05 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 61.73 | 45.59 |
| CDY35177 | Canola | nucleus | 41.56 | 44.1 |
| CDY03199 | Canola | nucleus | 40.74 | 44.0 |
| CDY66745 | Canola | nucleus | 40.33 | 43.95 |
| CDY69918 | Canola | nucleus | 40.74 | 43.81 |
| CDY69910 | Canola | nucleus | 40.74 | 43.81 |
| CDX87686 | Canola | nucleus | 40.74 | 42.86 |
| CDX87684 | Canola | nucleus | 40.33 | 41.7 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 47.74 | 40.85 |
| CDY06424 | Canola | cytosol | 38.27 | 40.79 |
| CDY44664 | Canola | plasma membrane | 47.74 | 39.46 |
| CDX98234 | Canola | cytosol | 23.87 | 33.72 |
| CDY27171 | Canola | nucleus | 28.81 | 29.17 |
| CDY12444 | Canola | nucleus | 28.4 | 28.75 |
| CDY36264 | Canola | nucleus | 22.63 | 28.65 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 42.39 | 28.3 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 26.34 | 27.83 |
| CDX81439 | Canola | cytosol | 29.22 | 27.73 |
| CDY37203 | Canola | cytosol | 28.81 | 27.45 |
| CDX89067 | Canola | cytosol | 27.98 | 27.42 |
| CDY43172 | Canola | nucleus | 22.63 | 27.36 |
| CDX71792 | Canola | cytosol | 27.16 | 27.16 |
| CDY48369 | Canola | cytosol | 27.57 | 26.91 |
| CDY02353 | Canola | mitochondrion, nucleus | 20.16 | 26.49 |
| CDY09414 | Canola | cytosol | 23.46 | 25.91 |
| CDY17645 | Canola | nucleus | 24.28 | 25.32 |
| CDX89603 | Canola | cytosol | 28.81 | 25.27 |
| CDX93111 | Canola | cytosol | 28.81 | 25.27 |
Protein Annotations
| EnsemblPlants:CDY33661 | EnsemblPlantsGene:GSBRNA2T00055024001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:DUF597 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil |
| PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 | ProteinID:CDY33661 | ProteinID:CDY33661.1 | SUPFAM:SSF57845 |
| UniParc:UPI0004EE040C | UniProt:A0A078H729 | MapMan:15.5.43 | : | : | : |
Description
BnaC08g19610DBnaC08g19610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H729]
Coordinates
chrLK032319:+:293599..294550
Molecular Weight (calculated)
27432.7 Da
IEP (calculated)
8.783
GRAVY (calculated)
-0.571
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKTEEEEDY TSPPWLMPML RGSYFIPCSI HADSNKNECN MFCLDCAGTA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKYLDISCV QTYIINSARI
101: LFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMKRGDQSLT FSMRGKHGRD YQGGLESDEA TTPTKLRKTK AFNRLMDGLS ISTVRFDDYG
201: PGGDQRSPSS GDEGGFSFSP GTPPIYNHRN SSRRKGIPHR APF
101: LFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMKRGDQSLT FSMRGKHGRD YQGGLESDEA TTPTKLRKTK AFNRLMDGLS ISTVRFDDYG
201: PGGDQRSPSS GDEGGFSFSP GTPPIYNHRN SSRRKGIPHR APF
001: MIRTEEEEDY TSPPWLMPML RGSYFVPCSI HVDSNKNECN LFCLDCAGNA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKFIDIACV QTYIINSAKI
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
Arabidopsis Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.