Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012263.1-P | Field mustard | cytosol | 43.77 | 72.36 |
| Bra003715.1-P | Field mustard | nucleus | 34.35 | 68.48 |
| CDY01340 | Canola | cytosol | 46.81 | 66.09 |
| PGSC0003DMT400025721 | Potato | plastid | 34.04 | 64.37 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 39.51 | 64.36 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 35.87 | 64.13 |
| Bra025865.1-P | Field mustard | cytosol | 47.42 | 63.93 |
| CDY29486 | Canola | cytosol | 47.42 | 63.93 |
| CDY04591 | Canola | cytosol | 47.11 | 63.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.91 | 63.37 |
| Bra015731.1-P | Field mustard | nucleus | 45.59 | 63.03 |
| CDX87583 | Canola | nucleus | 45.59 | 63.03 |
| AT1G21000.1 | Thale cress | cytosol | 47.11 | 63.01 |
| Bra016441.1-P | Field mustard | cytosol | 46.5 | 62.96 |
| CDX88300 | Canola | nucleus | 45.29 | 62.87 |
| CDX68093 | Canola | nucleus | 45.29 | 62.34 |
| CDY00356 | Canola | cytosol | 46.2 | 62.3 |
| CDY33661 | Canola | cytosol | 45.59 | 61.73 |
| AT1G76590.1 | Thale cress | cytosol | 45.29 | 60.82 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 41.95 | 60.79 |
| CDX85958 | Canola | nucleus | 44.98 | 59.2 |
| CDX96610 | Canola | cytosol | 46.5 | 57.95 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 38.6 | 52.48 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 38.6 | 52.48 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 37.99 | 51.65 |
| OQU76729 | Sorghum | cytosol, plastid | 39.51 | 50.78 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 36.47 | 50.21 |
| Os06t0624900-01 | Rice | cytosol | 37.99 | 49.41 |
| VIT_16s0039g01560.t01 | Wine grape | nucleus | 33.13 | 47.19 |
| VIT_06s0061g00880.t01 | Wine grape | cytosol | 18.84 | 46.62 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 18.84 | 45.59 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 35.87 | 45.04 |
| CDY06424 | Canola | cytosol | 26.14 | 37.72 |
| VIT_08s0007g04560.t01 | Wine grape | cytosol | 23.4 | 33.48 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 22.49 | 30.33 |
| VIT_11s0118g00600.t01 | Wine grape | nucleus | 21.88 | 29.39 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 21.58 | 28.4 |
| VIT_01s0011g01410.t01 | Wine grape | nucleus | 20.97 | 26.44 |
| VIT_03s0063g02240.t01 | Wine grape | extracellular | 19.15 | 26.14 |
| VIT_01s0011g06060.t01 | Wine grape | nucleus | 19.15 | 25.61 |
Protein Annotations
| ArrayExpress:VIT_18s0122g00320 | EMBL:FN596759 | EnsemblPlants:VIT_18s0122g00320.t01 | EnsemblPlantsGene:VIT_18s0122g00320 | InterPro:DUF597 | PANTHER:PTHR31065 |
| PANTHER:PTHR31065:SF12 | PFAM:PF04640 | ProteinID:CCB62693 | ProteinID:CCB62693.1 | UniParc:UPI0002108ECA | UniProt:F6I6X5 |
| MapMan:15.5.43 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:320109..322487
Molecular Weight (calculated)
37393.3 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.138
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDIRPENGL FLELNRLAID NQQREIPHHK KVMVSSIGRM GNDHLGPPWL KPMLRASYFV PCGIHGDSNK SECNMFCLDC MGDALCSYCL IHHKDHCVVQ
101: IRRSSYHNVV RVNEIQKYID ISCVQTYVIN SAKIVFLNER PQPRPGKGVT NTCEICCRSL LDSFRFCSLG CKLGAMKRGD PDLTFWLKLK HGRETFHGSE
201: SDESSTPRKF QRTHLFSRLM IDGPTISLDG HHDATTRPST TFLQQLLPFS TTAMPGEERC IYVHIITYMY GSFFVGKICN NGVALWLMYR KHAFNHTASV
301: FEVVIFSCFV HFLNSGVSHS GFISVAYAN
101: IRRSSYHNVV RVNEIQKYID ISCVQTYVIN SAKIVFLNER PQPRPGKGVT NTCEICCRSL LDSFRFCSLG CKLGAMKRGD PDLTFWLKLK HGRETFHGSE
201: SDESSTPRKF QRTHLFSRLM IDGPTISLDG HHDATTRPST TFLQQLLPFS TTAMPGEERC IYVHIITYMY GSFFVGKICN NGVALWLMYR KHAFNHTASV
301: FEVVIFSCFV HFLNSGVSHS GFISVAYAN
001: MIRTEEEEDY TSPPWLMPML RGSYFVPCSI HVDSNKNECN LFCLDCAGNA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKFIDIACV QTYIINSAKI
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF
Arabidopsis Description
At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.