Factsheet for Bra016441.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33661	Canola	cytosol	97.12	97.12
Bra025865.1-P	Field mustard	cytosol	93.83	93.44
Bra012263.1-P	Field mustard	cytosol	75.31	91.96
CDX96610	Canola	cytosol	99.18	91.29
Bra015731.1-P	Field mustard	nucleus	81.48	83.19
Bra003715.1-P	Field mustard	nucleus	51.03	75.15
GSMUA_Achr7P20650_001	Banana	cytosol	54.32	71.74
PGSC0003DMT400025721	Potato	plastid	48.15	67.24
GSMUA_Achr6P36360_001	Banana	cytosol	55.14	66.34
GSMUA_Achr9P12280_001	Banana	cytosol	60.91	65.2
GSMUA_AchrUn_...	Banana	cytosol	53.5	64.36
TraesCS7A01G394800.1	Wheat	cytosol	56.38	56.61
TraesCS7D01G390300.1	Wheat	cytosol	56.38	56.61
TraesCS7B01G296800.1	Wheat	cytosol	55.56	55.79
HORVU7Hr1G093120.4	Barley	cytosol	54.73	55.65
Os06t0624900-01	Rice	cytosol	57.61	55.34
OQU76729	Sorghum	cytosol, plastid	56.79	53.91
Bra035494.1-P	Field mustard	nucleus	47.74	52.97
Bra011992.1-P	Field mustard	nucleus	40.74	52.38
Bra012632.1-P	Field mustard	nucleus	46.09	52.34
Bra021029.1-P	Field mustard	nucleus	47.33	51.34
Bra034379.1-P	Field mustard	nucleus	40.33	51.31
Bra013266.1-P	Field mustard	nucleus	46.5	49.78
VIT_18s0122g00320.t01	Wine grape	cytosol	62.96	46.5
Bra022055.1-P	Field mustard	nucleus	40.74	44.39
Bra025003.1-P	Field mustard	nucleus	40.74	43.81
Bra022058.1-P	Field mustard	nucleus	41.15	43.67
Bra017531.1-P	Field mustard	nucleus	40.74	43.23
Bra023280.1-P	Field mustard	mitochondrion	47.74	40.99
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	28.4	28.75
Bra014899.1-P	Field mustard	nucleus	28.81	28.46
Bra037203.1-P	Field mustard	cytosol	29.63	28.24
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	26.34	27.83
Bra014478.1-P	Field mustard	cytosol	28.4	27.82
Bra013149.1-P	Field mustard	cytosol	29.63	25.99
Bra023155.1-P	Field mustard	nucleus	21.4	16.0

Protein Annotations

EnsemblPlants:Bra016441.1	EnsemblPlants:Bra016441.1-P	EnsemblPlantsGene:Bra016441	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:DUF597	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31065	PANTHER:PTHR31065:SF12	PFAM:PF04640	SUPFAM:SSF57845	UniParc:UPI0002546987	UniProt:M4DIW4
MapMan:15.5.43	:	:	:	:	:

Description

AT1G21000 (E=1e-136) | zinc-binding family protein

Coordinates

chrA08:-:18489337..18490290

Molecular Weight (calculated)

27414.7 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.567

Length

243 amino acids

Sequence
(BLAST)

001: MIRTEEEEDY TSPPWLMPML RGSYFIPCSI HADSNKNECN MFCLDCAGAA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKYIDISCV QTYIINSARI
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMKRGDQSLT FSMKGKHGRD YQGGLESDEA TTPTKLRKTK AFNRLMNGLS ISTVRFDDYG
201: PGGDQRSPNS GDEGGFSFSP GTPPIYNHRN SSRRKGIPHR APF

Best Arabidopsis Sequence Match ( AT1G21000.2 )
(BLAST)

001: MIRTEEEEDY TSPPWLMPML RGSYFVPCSI HVDSNKNECN LFCLDCAGNA FCSYCLVKHK DHRVVQIRRS SYHNVVRVNE IQKFIDIACV QTYIINSAKI
101: VFLNERPQPR IGKGVTNTCE ICCRSLLDSF RFCSLGCKLG GMRRGDLSLT FSLKGKHGRE YLGGSESDEA TTPTKMRKTN AFNRLMSGLS ISTVRFDDYG
201: PNGDQRSSSS GDEGGFSFSP GTPPIYNHRN SSRRKGVPHR APF

Arabidopsis Description

At1g21000/F9H16_1 [Source:UniProtKB/TrEMBL;Acc:Q93V70]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.