Factsheet for Bra003715.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85958	Canola	nucleus	92.12	60.8
Bra012263.1-P	Field mustard	cytosol	72.73	60.3
Bra015731.1-P	Field mustard	nucleus	79.39	55.04
AT1G76590.1	Thale cress	cytosol	78.79	53.06
Bra016441.1-P	Field mustard	cytosol	75.15	51.03
Bra025865.1-P	Field mustard	cytosol	74.55	50.41
PGSC0003DMT400025721	Potato	plastid	49.7	47.13
GSMUA_Achr6P36360_001	Banana	cytosol	56.36	46.04
GSMUA_AchrUn_...	Banana	cytosol	55.76	45.54
GSMUA_Achr9P12280_001	Banana	cytosol	59.39	43.17
GSMUA_Achr7P20650_001	Banana	cytosol	47.88	42.93
Bra035494.1-P	Field mustard	nucleus	56.97	42.92
Bra012632.1-P	Field mustard	nucleus	54.55	42.06
Bra011992.1-P	Field mustard	nucleus	47.88	41.8
Bra013266.1-P	Field mustard	nucleus	56.36	40.97
Bra021029.1-P	Field mustard	nucleus	55.15	40.62
Bra034379.1-P	Field mustard	nucleus	44.85	38.74
Bra025003.1-P	Field mustard	nucleus	52.73	38.5
Bra017531.1-P	Field mustard	nucleus	52.73	37.99
TraesCS7B01G296800.1	Wheat	cytosol	53.33	36.36
TraesCS7D01G390300.1	Wheat	cytosol	53.33	36.36
Os06t0624900-01	Rice	cytosol	55.76	36.36
TraesCS7A01G394800.1	Wheat	cytosol	53.33	36.36
OQU76729	Sorghum	cytosol, plastid	55.15	35.55
Bra022055.1-P	Field mustard	nucleus	47.88	35.43
HORVU7Hr1G093120.4	Barley	cytosol	50.3	34.73
Bra022058.1-P	Field mustard	nucleus	47.88	34.5
VIT_18s0122g00320.t01	Wine grape	cytosol	68.48	34.35
Bra023280.1-P	Field mustard	mitochondrion	58.18	33.92
Bra014899.1-P	Field mustard	nucleus	38.79	26.02
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	37.58	25.83
Bra037203.1-P	Field mustard	cytosol	38.18	24.71
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	33.33	23.91
Bra014478.1-P	Field mustard	cytosol	35.76	23.79
Bra013149.1-P	Field mustard	cytosol	38.18	22.74
Bra023155.1-P	Field mustard	nucleus	27.88	14.15

Protein Annotations

EnsemblPlants:Bra003715.1	EnsemblPlants:Bra003715.1-P	EnsemblPlantsGene:Bra003715	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF12
PFAM:PF04640	SEG:seg	SUPFAM:SSF57845	UniParc:UPI0002541557	UniProt:M4CHN2	MapMan:15.5.43

Description

AT1G76590 (E=4e-070) | zinc-binding family protein

Coordinates

chrA07:-:14655294..14655858

Molecular Weight (calculated)

19159.1 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.243

Length

165 amino acids

Sequence
(BLAST)

001: MMRAQEEEKE EEEEEEGHYR SPPWLIPMLR ANYFVPCSIH AGSNKSECNM FCLDCTSDAF CSYCLVNHKN HRVLQIRRSS YHNVVRVNEI QKYIDISCVQ
101: TYIINSARIV FLNERPQPRI GKGVTNTCEI CFRSLLDSYR FCSLGCKVNR IYSLCCIPVS VSLLN

Best Arabidopsis Sequence Match ( AT1G76590.1 )
(BLAST)

001: MGPMMMRAEE DNYNLNPPPW LIPMLRANYF IPCSIHAASN KSECNMFCLD CSSEAFCSYC LLNHRNHRVL QIRRSSYHNV VRVNEIQKYI DISCVQTYII
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF

Arabidopsis Description

At1g76590 [Source:UniProtKB/TrEMBL;Acc:Q2HIW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.