Factsheet for Bra025003.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69918	Canola	nucleus	97.79	97.79
CDY69910	Canola	nucleus	94.69	94.69
Bra017531.1-P	Field mustard	nucleus	81.42	80.35
Bra012632.1-P	Field mustard	nucleus	69.03	72.9
Bra021029.1-P	Field mustard	nucleus	70.35	70.98
Bra013266.1-P	Field mustard	nucleus	71.24	70.93
Bra022055.1-P	Field mustard	nucleus	64.6	65.47
AT5G46710.1	Thale cress	nucleus	63.72	63.72
Bra022058.1-P	Field mustard	nucleus	63.27	62.45
KRH39550	Soybean	nucleus	63.27	60.59
KRH74408	Soybean	nucleus	63.27	60.59
KRH75604	Soybean	nucleus	56.19	60.48
PGSC0003DMT400046007	Potato	cytosol	57.08	57.59
PGSC0003DMT400045164	Potato	nucleus	57.52	57.27
Solyc08g076860.2.1	Tomato	nucleus	57.52	57.02
Bra035494.1-P	Field mustard	nucleus	54.87	56.62
PGSC0003DMT400019836	Potato	nucleus	55.75	56.5
Solyc06g061240.2.1	Tomato	nucleus	55.75	56.25
Solyc08g005100.2.1	Tomato	cytosol	54.42	54.91
Bra003715.1-P	Field mustard	nucleus	38.5	52.73
TraesCS6B01G291400.1	Wheat	nucleus	57.52	52.42
KXG30975	Sorghum	nucleus	57.96	51.98
TraesCS6D01G250500.1	Wheat	nucleus	57.08	51.81
VIT_02s0012g01400.t01	Wine grape	nucleus	59.73	51.53
Os02t0692700-01	Rice	nucleus	58.41	51.36
TraesCS2D01G447400.1	Wheat	cytosol	55.75	51.22
TraesCS2B01G469000.1	Wheat	cytosol	55.75	51.22
Zm00001d051511_P001	Maize	nucleus	56.64	51.0
EES12755	Sorghum	nucleus	56.64	51.0
TraesCS2A01G448300.1	Wheat	cytosol	55.31	50.81
Os04t0591100-01	Rice	nucleus	55.75	50.6
Zm00001d017682_P001	Maize	nucleus	55.31	49.6
Zm00001d026047_P002	Maize	nucleus	55.31	49.41
Zm00001d002489_P001	Maize	nucleus	55.75	49.22
TraesCS6A01G264400.2	Wheat	nucleus	57.08	46.91
Bra023280.1-P	Field mustard	mitochondrion	57.96	46.29
Bra012263.1-P	Field mustard	cytosol	39.82	45.23
Bra015731.1-P	Field mustard	nucleus	44.69	42.44
Bra034379.1-P	Field mustard	nucleus	35.84	42.41
Bra011992.1-P	Field mustard	nucleus	34.51	41.27
Bra025865.1-P	Field mustard	cytosol	44.25	40.98
Bra016441.1-P	Field mustard	cytosol	43.81	40.74
HORVU6Hr1G067060.3	Barley	nucleus, plastid	50.0	35.2
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	32.74	30.83
Bra037203.1-P	Field mustard	cytosol	34.07	30.2
Bra014478.1-P	Field mustard	cytosol	32.3	29.44
Bra014899.1-P	Field mustard	nucleus	31.86	29.27
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	29.65	29.13
Bra013149.1-P	Field mustard	cytosol	33.63	27.44
Bra023155.1-P	Field mustard	nucleus	23.89	16.62

Protein Annotations

EnsemblPlants:Bra025003.1	EnsemblPlants:Bra025003.1-P	EnsemblPlantsGene:Bra025003	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF8
PFAM:PF04640	UniParc:UPI000253FB72	UniProt:M4E897	MapMan:15.5.43	:	:

Description

AT4G17900 (E=3e-091) | zinc-binding family protein

Coordinates

chrA06:+:24634883..24636026

Molecular Weight (calculated)

25623.7 Da

IEP (calculated)

9.039

GRAVY (calculated)

-0.586

Length

226 amino acids

Sequence
(BLAST)

001: MAIEDYENPH RVIKPKNRRI MGADGLEEEE NHRWPAWLKP LLKEHFFVQC NVHSPKSECK MYCLDCANGS LCALCLAHHN NHRTIQIRRS SYHDVIRVNE
101: IQKYLDIFGI QTYVINSAKV VFLNERPQPR PGKGVTNTCK VCYRGLVDDC FSFCSLGCKV AGTARSFEKR VKPTPMEPDN SSSNSSGVED NIPNAQSLAP
201: STPHLPTSTS LRKRKRKGIP FQSPLQ

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.