Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03199 | Canola | nucleus | 64.16 | 64.44 |
| CDY35177 | Canola | nucleus | 65.04 | 64.19 |
| CDY69918 | Canola | nucleus | 64.16 | 64.16 |
| Bra017531.1-P | Field mustard | nucleus | 64.6 | 63.76 |
| CDY69910 | Canola | nucleus | 63.72 | 63.72 |
| Bra025003.1-P | Field mustard | nucleus | 63.72 | 63.72 |
| CDY66745 | Canola | nucleus | 58.41 | 59.19 |
| Bra022055.1-P | Field mustard | nucleus | 58.41 | 59.19 |
| AT4G17900.1 | Thale cress | nucleus | 59.29 | 59.03 |
| Bra022058.1-P | Field mustard | nucleus | 58.85 | 58.08 |
| CDX87686 | Canola | nucleus | 59.29 | 58.01 |
| CDY72135 | Canola | cytosol, nucleus | 53.98 | 56.74 |
| KRH39550 | Soybean | nucleus | 57.08 | 54.66 |
| CDX87684 | Canola | nucleus | 56.64 | 54.47 |
| KRH74408 | Soybean | nucleus | 56.64 | 54.24 |
| AT1G32700.1 | Thale cress | cytosol | 50.88 | 53.99 |
| KRH75604 | Soybean | nucleus | 48.67 | 52.38 |
| Solyc08g076860.2.1 | Tomato | nucleus | 52.65 | 52.19 |
| PGSC0003DMT400045164 | Potato | nucleus | 52.21 | 51.98 |
| PGSC0003DMT400046007 | Potato | cytosol | 49.56 | 50.0 |
| PGSC0003DMT400019836 | Potato | nucleus | 49.12 | 49.78 |
| Solyc06g061240.2.1 | Tomato | nucleus | 49.12 | 49.55 |
| Solyc08g005100.2.1 | Tomato | cytosol | 48.23 | 48.66 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 52.65 | 48.37 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 52.65 | 48.37 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 55.75 | 48.09 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 52.21 | 47.97 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 52.21 | 47.58 |
| Os04t0591100-01 | Rice | nucleus | 52.21 | 47.39 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 52.21 | 47.39 |
| Os02t0692700-01 | Rice | nucleus | 53.54 | 47.08 |
| KXG30975 | Sorghum | nucleus | 52.21 | 46.83 |
| EES12755 | Sorghum | nucleus | 51.77 | 46.61 |
| Zm00001d002489_P001 | Maize | nucleus | 52.21 | 46.09 |
| Zm00001d026047_P002 | Maize | nucleus | 50.88 | 45.45 |
| Zm00001d017682_P001 | Maize | nucleus | 50.0 | 44.84 |
| Zm00001d051511_P001 | Maize | nucleus | 49.12 | 44.22 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 51.77 | 42.55 |
| AT1G76590.1 | Thale cress | cytosol | 43.81 | 40.41 |
| AT1G43000.2 | Thale cress | cytosol | 39.82 | 40.36 |
| AT1G21000.1 | Thale cress | cytosol | 42.04 | 38.62 |
| AT2G27930.5 | Thale cress | plastid | 30.09 | 35.42 |
| AT1G31040.1 | Thale cress | nucleus | 30.97 | 28.81 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 40.71 | 28.66 |
| AT2G01818.1 | Thale cress | nucleus | 26.55 | 27.03 |
| AT2G12646.1 | Thale cress | nucleus | 30.09 | 26.56 |
| AT3G60670.1 | Thale cress | cytosol | 28.76 | 26.53 |
Protein Annotations
| MapMan:15.5.43 | EntrezGene:834714 | UniProt:A0A178UMA4 | ProteinID:AED95416.1 | ArrayExpress:AT5G46710 | EnsemblPlantsGene:AT5G46710 |
| RefSeq:AT5G46710 | TAIR:AT5G46710 | RefSeq:AT5G46710-TAIR-G | EnsemblPlants:AT5G46710.1 | TAIR:AT5G46710.1 | EMBL:AY088190 |
| Unigene:At.29934 | ProteinID:BAB08915.1 | EMBL:BT025786 | InterPro:DUF597 | GO:GO:0008150 | RefSeq:NP_199483.1 |
| ProteinID:OAO94162.1 | PFAM:PF04640 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | UniProt:Q9FIQ4 | UniParc:UPI00000A3698 |
| SEG:seg | : | : | : | : | : |
Description
At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
Coordinates
chr5:-:18952603..18954692
Molecular Weight (calculated)
25823.6 Da
IEP (calculated)
9.041
GRAVY (calculated)
-0.718
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.