Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g076860.2.1 | Tomato | nucleus | 97.8 | 97.37 |
| KRH75604 | Soybean | nucleus | 81.06 | 87.62 |
| KRH74408 | Soybean | nucleus | 82.82 | 79.66 |
| PGSC0003DMT400046007 | Potato | cytosol | 77.97 | 79.02 |
| KRH39550 | Soybean | nucleus | 81.94 | 78.81 |
| PGSC0003DMT400019836 | Potato | nucleus | 77.09 | 78.48 |
| AT1G32700.1 | Thale cress | cytosol | 69.6 | 74.18 |
| Bra035494.1-P | Field mustard | nucleus | 70.04 | 72.6 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 82.38 | 71.37 |
| CDY01500 | Canola | nucleus | 66.08 | 70.09 |
| Bra012632.1-P | Field mustard | nucleus | 65.2 | 69.16 |
| CDX90437 | Canola | nucleus | 65.2 | 69.16 |
| AT4G17900.1 | Thale cress | nucleus | 67.84 | 67.84 |
| CDY44504 | Canola | nucleus | 67.84 | 67.84 |
| CDX78810 | Canola | nucleus | 67.4 | 67.4 |
| Bra013266.1-P | Field mustard | nucleus | 66.96 | 66.96 |
| CDY08880 | Canola | nucleus | 65.2 | 66.07 |
| CDX76551 | Canola | nucleus | 64.76 | 65.62 |
| Bra021029.1-P | Field mustard | nucleus | 64.76 | 65.62 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 70.93 | 64.92 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 70.48 | 64.26 |
| Os04t0591100-01 | Rice | nucleus | 70.04 | 63.86 |
| Os02t0692700-01 | Rice | nucleus | 72.25 | 63.81 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 68.28 | 63.01 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 68.28 | 63.01 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 67.84 | 62.6 |
| EES12755 | Sorghum | nucleus | 69.16 | 62.55 |
| KXG30975 | Sorghum | nucleus | 69.16 | 62.3 |
| Zm00001d017682_P001 | Maize | nucleus | 67.4 | 60.71 |
| Zm00001d002489_P001 | Maize | nucleus | 68.28 | 60.55 |
| Zm00001d051511_P001 | Maize | nucleus | 65.64 | 59.36 |
| Zm00001d026047_P002 | Maize | nucleus | 66.08 | 59.29 |
| CDY35177 | Canola | nucleus | 59.03 | 58.52 |
| CDY69918 | Canola | nucleus | 58.15 | 58.41 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 70.48 | 58.18 |
| Bra017531.1-P | Field mustard | nucleus | 58.59 | 58.08 |
| CDY69910 | Canola | nucleus | 57.71 | 57.96 |
| CDY03199 | Canola | nucleus | 57.27 | 57.78 |
| Bra025003.1-P | Field mustard | nucleus | 57.27 | 57.52 |
| CDY72135 | Canola | cytosol, nucleus | 54.19 | 57.21 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 70.93 | 56.69 |
| Bra023280.1-P | Field mustard | mitochondrion | 70.04 | 56.18 |
| CDY66745 | Canola | nucleus | 55.07 | 56.05 |
| Bra022055.1-P | Field mustard | nucleus | 55.07 | 56.05 |
| PGSC0003DMT400025721 | Potato | plastid | 42.73 | 55.75 |
| CDX87686 | Canola | nucleus | 55.51 | 54.55 |
| Bra022058.1-P | Field mustard | nucleus | 54.63 | 54.15 |
| CDY44664 | Canola | plasma membrane | 70.04 | 54.08 |
| CDX87684 | Canola | nucleus | 54.63 | 52.77 |
| PGSC0003DMT400022166 | Potato | extracellular | 47.58 | 52.68 |
| AT5G46710.1 | Thale cress | nucleus | 51.98 | 52.21 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 56.83 | 40.19 |
| PGSC0003DMT400090715 | Potato | cytosol | 18.5 | 38.89 |
| PGSC0003DMT400097455 | Potato | cytosol | 17.62 | 37.04 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 57.71 | 35.99 |
| PGSC0003DMT400089328 | Potato | vacuole | 24.67 | 35.22 |
| PGSC0003DMT400075780 | Potato | nucleus | 30.4 | 33.82 |
| PGSC0003DMT400020401 | Potato | cytosol | 33.04 | 30.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045164 | EnsemblPlantsGene:PGSC0003DMG400017518 | EntrezGene:102599612 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 |
| PFAM:PF04640 | PGSC:PGSC0003DMG400017518 | RefSeq:XP_006352862.1 | SEG:seg | UniParc:UPI000296AB67 | UniProt:M1BH72 |
| MapMan:15.5.43 | : | : | : | : | : |
Description
Zinc-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017518]
Coordinates
chr8:-:49492043..49494006
Molecular Weight (calculated)
25525.5 Da
IEP (calculated)
9.742
GRAVY (calculated)
-0.647
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGGPDEED NRWPPWLKPL LKERFFVQCK LHADSHKSEC NMYCLDCMDG ALCSICLSHH KDHRAIQIRR SSYHDVIRVN EIQKFLDITS VQTYIINSAK
101: VVFLNERPQP RPGKGVTNTC EVCERSLLDS FRFCSLGCKI VGTSKNFVKR PKQSPEKKRS SPAAAALYDS EDSYSSSSHG RQKSPSNKVH QSFSPSTPPP
201: TSVNYRTAKR RKGIPHRAPM GGLVIGY
101: VVFLNERPQP RPGKGVTNTC EVCERSLLDS FRFCSLGCKI VGTSKNFVKR PKQSPEKKRS SPAAAALYDS EDSYSSSSHG RQKSPSNKVH QSFSPSTPPP
201: TSVNYRTAKR RKGIPHRAPM GGLVIGY
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.