Factsheet for PGSC0003DMT400089328

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090715	Potato	cytosol	61.64	90.74
PGSC0003DMT400097455	Potato	cytosol	57.23	84.26
Solyc02g033100.1.1	Tomato	nucleus	88.68	77.9
Solyc02g036230.1.1	Tomato	nucleus	86.79	76.24
Solyc02g033110.1.1	Tomato	nucleus	74.84	74.38
Solyc02g033120.1.1	Tomato	nucleus	73.58	73.12
Solyc02g036170.1.1	Tomato	nucleus	76.73	72.19
Solyc02g036140.1.1	Tomato	nucleus	73.58	69.23
Solyc02g036130.1.1	Tomato	cytosol	58.49	67.88
Solyc02g036200.1.1	Tomato	nucleus	76.1	67.6
Solyc02g036120.1.1	Tomato	peroxisome	64.78	63.58
KRH72960	Soybean	nucleus	28.3	44.55
PGSC0003DMT400075780	Potato	nucleus	40.25	31.37
GSMUA_AchrUn_...	Banana	nucleus	38.36	28.5
PGSC0003DMT400022166	Potato	extracellular	36.48	28.29
PGSC0003DMT400019836	Potato	nucleus	35.85	25.56
PGSC0003DMT400046007	Potato	cytosol	35.85	25.45
PGSC0003DMT400025721	Potato	plastid	27.04	24.71
PGSC0003DMT400045164	Potato	nucleus	35.22	24.67
TraesCS6B01G276500.1	Wheat	cytosol	28.93	23.23
EES07500	Sorghum	nucleus	28.3	22.5
PGSC0003DMT400020401	Potato	cytosol	34.59	22.36
Zm00001d051376_P001	Maize	cytosol	27.67	22.22
TraesCS6A01G248200.1	Wheat	cytosol	28.3	22.17
TraesCS6D01G230300.1	Wheat	cytosol	28.3	22.17
Os02t0661400-00	Rice	cytosol	27.04	19.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400089328	EnsemblPlantsGene:PGSC0003DMG400038899	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	InterPro:DUF597	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31065
PANTHER:PTHR31065:SF9	PFAM:PF04640	PFscan:PS50119	PGSC:PGSC0003DMG400038899	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF57845	UniParc:UPI00029491A4	UniProt:M1DHY2	MapMan:15.5.43	:	:

Description

Zinc-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038899]

Coordinates

chr2:-:17570646..17572922

Molecular Weight (calculated)

18514.9 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.455

Length

159 amino acids

Sequence
(BLAST)

001: MPTWLGLLLK KTFFGACLVH DELQKNELSK YCITCDSDLC MYCISSNKHN DHDQLKIYRH VYKDVVPLEQ MEKYIDCKLI QPYRCNKKWV IALNPLPHCG
101: SGSLIAGDPT CLTCKRRLHD PEQFQFCSIA CQVEAKWGKI AEMKRKRKRK GIPRRAPLK

Best Arabidopsis Sequence Match ( AT2G01818.1 )
(BLAST)

001: MNLSEKRRSE EVWIETLLNS EFFGICMNHK YLRKNEKNVF CIDCNVEICR HCCNTVTDSH FLHRRLQICK YVYQDVIRLL EIQNYFDCSE IQTYKINGEK
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY

Arabidopsis Description

PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A8MQN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.