Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g005100.2.1 | Tomato | cytosol | 92.86 | 92.86 |
| KRH75604 | Soybean | nucleus | 75.45 | 80.48 |
| PGSC0003DMT400045164 | Potato | nucleus | 79.02 | 77.97 |
| PGSC0003DMT400019836 | Potato | nucleus | 76.34 | 76.68 |
| KRH74408 | Soybean | nucleus | 77.23 | 73.31 |
| KRH39550 | Soybean | nucleus | 76.79 | 72.88 |
| Bra035494.1-P | Field mustard | nucleus | 69.2 | 70.78 |
| AT1G32700.1 | Thale cress | cytosol | 66.96 | 70.42 |
| CDY01500 | Canola | nucleus | 64.29 | 67.29 |
| CDX90437 | Canola | nucleus | 63.39 | 66.36 |
| Bra012632.1-P | Field mustard | nucleus | 63.39 | 66.36 |
| AT4G17900.1 | Thale cress | nucleus | 66.07 | 65.2 |
| CDX78810 | Canola | nucleus | 66.07 | 65.2 |
| CDY44504 | Canola | nucleus | 66.07 | 65.2 |
| Bra013266.1-P | Field mustard | nucleus | 65.62 | 64.76 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 75.0 | 64.12 |
| Bra021029.1-P | Field mustard | nucleus | 63.39 | 63.39 |
| CDX76551 | Canola | nucleus | 63.39 | 63.39 |
| CDY08880 | Canola | nucleus | 62.5 | 62.5 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 66.52 | 60.08 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 66.52 | 59.84 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 65.62 | 59.76 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 65.62 | 59.76 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 65.62 | 59.76 |
| Os04t0591100-01 | Rice | nucleus | 66.07 | 59.44 |
| Os02t0692700-01 | Rice | nucleus | 66.96 | 58.37 |
| KXG30975 | Sorghum | nucleus | 64.73 | 57.54 |
| Bra025003.1-P | Field mustard | nucleus | 57.59 | 57.08 |
| CDY69918 | Canola | nucleus | 57.59 | 57.08 |
| CDY69910 | Canola | nucleus | 57.14 | 56.64 |
| EES12755 | Sorghum | nucleus | 63.39 | 56.57 |
| CDY66745 | Canola | nucleus | 56.25 | 56.5 |
| Bra022055.1-P | Field mustard | nucleus | 56.25 | 56.5 |
| CDY03199 | Canola | nucleus | 56.7 | 56.44 |
| CDY72135 | Canola | cytosol, nucleus | 54.02 | 56.28 |
| Zm00001d002489_P001 | Maize | nucleus | 64.29 | 56.25 |
| Zm00001d017682_P001 | Maize | nucleus | 62.95 | 55.95 |
| CDY35177 | Canola | nucleus | 57.14 | 55.9 |
| Zm00001d026047_P002 | Maize | nucleus | 62.95 | 55.73 |
| Bra017531.1-P | Field mustard | nucleus | 56.7 | 55.46 |
| Zm00001d051511_P001 | Maize | nucleus | 61.16 | 54.58 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 69.2 | 54.58 |
| CDX87686 | Canola | nucleus | 55.36 | 53.68 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 65.62 | 53.45 |
| Bra023280.1-P | Field mustard | mitochondrion | 67.41 | 53.36 |
| Bra022058.1-P | Field mustard | nucleus | 54.46 | 53.28 |
| CDY44664 | Canola | plasma membrane | 68.75 | 52.38 |
| CDX87684 | Canola | nucleus | 54.91 | 52.34 |
| PGSC0003DMT400025721 | Potato | plastid | 40.62 | 52.3 |
| PGSC0003DMT400022166 | Potato | extracellular | 45.54 | 49.76 |
| AT5G46710.1 | Thale cress | nucleus | 50.0 | 49.56 |
| PGSC0003DMT400090715 | Potato | cytosol | 19.64 | 40.74 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 54.91 | 38.32 |
| PGSC0003DMT400097455 | Potato | cytosol | 17.86 | 37.04 |
| PGSC0003DMT400089328 | Potato | vacuole | 25.45 | 35.85 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 56.25 | 34.62 |
| PGSC0003DMT400075780 | Potato | nucleus | 29.91 | 32.84 |
| PGSC0003DMT400020401 | Potato | cytosol | 34.38 | 31.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400046007 | EnsemblPlantsGene:PGSC0003DMG400017849 | EntrezGene:102593997 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 |
| PFAM:PF04640 | PGSC:PGSC0003DMG400017849 | RefSeq:XP_006367453.2 | UniParc:UPI00029699BC | UniProt:M1BII8 | MapMan:15.5.43 |
Description
Zinc-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017849]
Coordinates
chr8:-:4217824..4221480
Molecular Weight (calculated)
25656.0 Da
IEP (calculated)
9.715
GRAVY (calculated)
-0.536
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGARGPDEEE NNWPPWLKPL LKERFFVQCK LHIDSHKSEC NMYCLDCING PLCSLCLSHH KDHIAIQIRR SSYHDVIRVN EIQKYLDISL VQTYIINSAK
101: IVFLNERPQP RPGKGVTNTC QVCERTLLDS FNFCSLGCKV IGTSKNFIKK PRDLLAKRRL KAIASDSDDT YSHNNHGRYR STTINKVQSF IPSTPPPTSV
201: NYRTAKRRKG IPHRSPMGGL VIEY
101: IVFLNERPQP RPGKGVTNTC QVCERTLLDS FNFCSLGCKV IGTSKNFIKK PRDLLAKRRL KAIASDSDDT YSHNNHGRYR STTINKVQSF IPSTPPPTSV
201: NYRTAKRRKG IPHRSPMGGL VIEY
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.