Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g008090.2.1 | Tomato | cytosol | 95.1 | 91.08 |
| VIT_01s0011g06060.t01 | Wine grape | nucleus | 61.76 | 51.22 |
| CDY36264 | Canola | nucleus | 43.14 | 45.83 |
| CDY09414 | Canola | cytosol | 49.02 | 45.45 |
| AT2G01818.1 | Thale cress | nucleus | 49.02 | 45.05 |
| CDY17645 | Canola | nucleus | 47.55 | 41.63 |
| PGSC0003DMT400089328 | Potato | vacuole | 31.37 | 40.25 |
| PGSC0003DMT400097455 | Potato | cytosol | 20.59 | 38.89 |
| PGSC0003DMT400090715 | Potato | cytosol | 20.1 | 37.96 |
| PGSC0003DMT400022166 | Potato | extracellular | 35.78 | 35.61 |
| PGSC0003DMT400025721 | Potato | plastid | 27.45 | 32.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 31.78 |
| KRH49692 | Soybean | nucleus | 34.8 | 31.56 |
| KRH60448 | Soybean | nucleus | 35.78 | 30.67 |
| KRH41746 | Soybean | nucleus | 35.78 | 30.67 |
| PGSC0003DMT400045164 | Potato | nucleus | 33.82 | 30.4 |
| PGSC0003DMT400046007 | Potato | cytosol | 32.84 | 29.91 |
| PGSC0003DMT400019836 | Potato | nucleus | 32.35 | 29.6 |
| PGSC0003DMT400020401 | Potato | cytosol | 30.88 | 25.61 |
| EES07500 | Sorghum | nucleus | 25.0 | 25.5 |
| Zm00001d051376_P001 | Maize | cytosol | 24.51 | 25.25 |
| TraesCS6A01G248200.1 | Wheat | cytosol | 25.0 | 25.12 |
| TraesCS6D01G230300.1 | Wheat | cytosol | 25.0 | 25.12 |
| TraesCS6B01G276500.1 | Wheat | cytosol | 24.02 | 24.75 |
| Os02t0661400-00 | Rice | cytosol | 25.98 | 23.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075780 | EnsemblPlantsGene:PGSC0003DMG400029466 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:DUF597 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31065 |
| PANTHER:PTHR31065:SF15 | PFAM:PF04640 | PFscan:PS50119 | PGSC:PGSC0003DMG400029466 | SEG:seg | UniParc:UPI000295F652 |
| UniProt:M1CVP4 | MapMan:15.5.43 | : | : | : | : |
Description
Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029466]
Coordinates
chr4:-:2757164..2759771
Molecular Weight (calculated)
23885.8 Da
IEP (calculated)
8.835
GRAVY (calculated)
-0.668
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGVDWIENL LNIKFFESCG YHRELRRNEK NMFCIDCNLC FCKHCVSSSS HCFHEWLQIC KYVYHDVIRL HEIQKHLNCS EIQTYKINGE KAIHLNPRPQ
101: SKDNKTSKLK GNVTCEACGR HLQDLPNRFC SIACKVSIDA NICKERQKNY ISNQITKFDH SNENESCISL NESSEVIQTW CISPLKPKKN LRKRKGVPRR
201: APIR
101: SKDNKTSKLK GNVTCEACGR HLQDLPNRFC SIACKVSIDA NICKERQKNY ISNQITKFDH SNENESCISL NESSEVIQTW CISPLKPKKN LRKRKGVPRR
201: APIR
001: MNLSEKRRSE EVWIETLLNS EFFGICMNHK YLRKNEKNVF CIDCNVEICR HCCNTVTDSH FLHRRLQICK YVYQDVIRLL EIQNYFDCSE IQTYKINGEK
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY
Arabidopsis Description
PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A8MQN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.