Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400097455 | Potato | cytosol | 85.19 | 85.19 |
| PGSC0003DMT400089328 | Potato | vacuole | 90.74 | 61.64 |
| KRH72960 | Soybean | nucleus | 40.74 | 43.56 |
| PGSC0003DMT400022166 | Potato | extracellular | 41.67 | 21.95 |
| PGSC0003DMT400075780 | Potato | nucleus | 37.96 | 20.1 |
| PGSC0003DMT400046007 | Potato | cytosol | 40.74 | 19.64 |
| PGSC0003DMT400019836 | Potato | nucleus | 39.81 | 19.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.96 | 19.16 |
| PGSC0003DMT400045164 | Potato | nucleus | 38.89 | 18.5 |
| TraesCS6B01G276500.1 | Wheat | cytosol | 32.41 | 17.68 |
| PGSC0003DMT400020401 | Potato | cytosol | 38.89 | 17.07 |
| EES07500 | Sorghum | nucleus | 31.48 | 17.0 |
| TraesCS6A01G248200.1 | Wheat | cytosol | 31.48 | 16.75 |
| TraesCS6D01G230300.1 | Wheat | cytosol | 31.48 | 16.75 |
| Zm00001d051376_P001 | Maize | cytosol | 30.56 | 16.67 |
| PGSC0003DMT400025721 | Potato | plastid | 25.0 | 15.52 |
| Os02t0661400-00 | Rice | cytosol | 30.56 | 14.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400090715 | EnsemblPlantsGene:PGSC0003DMG400040286 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF9 |
| PFAM:PF00643 | PFscan:PS50119 | PGSC:PGSC0003DMG400040286 | SUPFAM:SSF57845 | UniParc:UPI0002961F3D | UniProt:M1DL08 |
| MapMan:15.5.43 | : | : | : | : | : |
Description
Zinc-binding family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040286]
Coordinates
chr2:-:17481391..17483812
Molecular Weight (calculated)
12763.8 Da
IEP (calculated)
9.974
GRAVY (calculated)
-0.692
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTWLGPLLK KTFFGTCSVH GELQKSELNK YCITCDSDLC RYCISTNKHN DHDQLKIYRH VYKDVVPLQQ MEKYIDCKLI QVEAKWGKIA EMKRKRKRKG
101: IPHRAPLK
101: IPHRAPLK
001: MSQCSLEGAG GPEEEENRWP PWLKPLLKEQ FFVHCKFHGD SHKSECNMYC LDCTNGPLCS LCLAHHKDHR TIQIRRSSYH DVIRVNEIQK YLDIGGIQTY
101: VINSAKVVFL NERPQPRPGK GVTNTCKVCY RSLVDDSFRF CSLGCKIAGT SRGFEKGREN LLMETEDSSS SIAIGKNITN LQSFSPSTPP LTTSSNCRIV
201: KRRKGIPHRS PMG
101: VINSAKVVFL NERPQPRPGK GVTNTCKVCY RSLVDDSFRF CSLGCKIAGT SRGFEKGREN LLMETEDSSS SIAIGKNITN LQSFSPSTPP LTTSSNCRIV
201: KRRKGIPHRS PMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.