Factsheet for PGSC0003DMT400020401

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010470.1.1	Tomato	cytosol	99.59	99.59
VIT_11s0118g00600.t01	Wine grape	nucleus	75.61	75.92
KRH12861	Soybean	nucleus	71.95	74.06
KRH37851	Soybean	nucleus	71.54	73.64
KRH03576	Soybean	nucleus	73.98	73.39
KRH20236	Soybean	nucleus	73.58	73.28
Zm00001d015560_P001	Maize	nucleus	66.67	69.2
KXG29636	Sorghum	nucleus	65.85	68.35
HORVU6Hr1G028520.1	Barley	cytosol, extracellular, nucleus	65.45	67.93
Os02t0183000-00	Rice	cytosol, extracellular, nucleus	65.04	67.51
TraesCS6D01G134200.1	Wheat	nucleus	65.04	67.51
TraesCS6B01G173400.1	Wheat	nucleus	65.04	67.51
TraesCS6A01G145200.1	Wheat	nucleus	64.23	66.67
AT2G12646.1	Thale cress	nucleus	65.85	63.28
CDY37203	Canola	cytosol	65.45	63.14
Bra037203.1-P	Field mustard	cytosol	65.45	63.14
CDX81439	Canola	cytosol	65.45	62.89
CDX93111	Canola	cytosol	67.48	59.93
Bra013149.1-P	Field mustard	cytosol	67.48	59.93
GSMUA_Achr9P22490_001	Banana	mitochondrion	60.16	59.68
CDX89603	Canola	cytosol	67.07	59.57
GSMUA_Achr1P09990_001	Banana	nucleus, plastid	65.45	56.69
GSMUA_Achr6P30690_001	Banana	nucleus	56.1	55.2
GSMUA_Achr6P35220_001	Banana	nucleus	60.16	51.93
PGSC0003DMT400090715	Potato	cytosol	17.07	38.89
PGSC0003DMT400097455	Potato	cytosol	16.67	37.96
PGSC0003DMT400025721	Potato	plastid	25.2	35.63
PGSC0003DMT400022166	Potato	extracellular	29.27	35.12
PGSC0003DMT400089328	Potato	vacuole	22.36	34.59
PGSC0003DMT400046007	Potato	cytosol	31.3	34.38
PGSC0003DMT400019836	Potato	nucleus	30.89	34.08
PGSC0003DMT400045164	Potato	nucleus	30.49	33.04
PGSC0003DMT400075780	Potato	nucleus	25.61	30.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400020401	EnsemblPlantsGene:PGSC0003DMG400007885	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF11	PFAM:PF04640
PGSC:PGSC0003DMG400007885	SEG:seg	UniParc:UPI0002957501	UniProt:M1ADF1	MapMan:15.5.43	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007885]

Coordinates

chr12:-:1918893..1920823

Molecular Weight (calculated)

28043.6 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.427

Length

246 amino acids

Sequence
(BLAST)

001: MGIQKPSWLK ALYVEKFFVP CSIHESAKKN EKNVCCLDCN ISICPHCVTS HRVHRLLQIR RYVYHEVVRL EDIENLIDCS NIQAYTINNA KVVFIKKRPQ
101: NRQFKGGNYC TSCDRSLQEP FIHCSLGCKV EFVLKHHKDL SPFLRRCTIL QLSSDFFIPQ DMGDDDMAID TAHSTIVDND EPWSSSSSTG SGSENMSFPC
201: TEFVRKKRSG MHVCGRSANN CNNITEEDMA TSISRRKGIP QRSPLC

Best Arabidopsis Sequence Match ( AT2G12646.1 )
(BLAST)

001: MGIQKPAWLD ALYAEKFFVG CPYHETAKKN ERNVCCLDCC TSLCPHCVPS HRFHRLLQVR RYVYHDVVRL EDLQKLIDCS NVQAYTINSA KVVFIKKRPQ
101: NRQFKGAGNY CTSCDRSLQE PYIHCSLGCK VDFVMKRYRD ITPFLKPCHT LTLGPDYIIP QDLLTDDEVA AYETPRSTVV DGDESMSWSS ASSDNNNAGA
201: AAAYAATTTH VVRKKRTGFC LCAKSANSYK EVSEDPDDIS ACINRRKGVP QRSPLC

Arabidopsis Description

PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.