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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • extracellular 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:extracellular
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G134200.1 Wheat nucleus 98.73 98.73
TraesCS6B01G173400.1 Wheat nucleus 98.31 98.31
TraesCS6A01G145200.1 Wheat nucleus 97.47 97.47
Os02t0183000-00 Rice cytosol, extracellular, nucleus 93.25 93.25
KXG29636 Sorghum nucleus 91.56 91.56
Zm00001d015560_P001 Maize nucleus 91.56 91.56
GSMUA_Achr9P22490_001 Banana mitochondrion 73.0 69.76
VIT_11s0118g00600.t01 Wine grape nucleus 71.31 68.98
KRH37851 Soybean nucleus 67.93 67.36
KRH12861 Soybean nucleus 67.93 67.36
KRH20236 Soybean nucleus 70.04 67.21
KRH03576 Soybean nucleus 70.04 66.94
Solyc07g007320.1.1 Tomato cytosol 70.89 65.88
PGSC0003DMT400020401 Potato cytosol 67.93 65.45
Solyc12g010470.1.1 Tomato cytosol 67.51 65.04
GSMUA_Achr1P09990_001 Banana nucleus, plastid 75.95 63.38
GSMUA_Achr6P30690_001 Banana nucleus 66.67 63.2
AT2G12646.1 Thale cress nucleus 66.67 61.72
Bra037203.1-P Field mustard cytosol 63.71 59.22
CDY37203 Canola cytosol 63.71 59.22
GSMUA_Achr6P35220_001 Banana nucleus 70.46 58.6
CDX81439 Canola cytosol 63.29 58.59
Bra013149.1-P Field mustard cytosol 64.98 55.6
CDX93111 Canola cytosol 64.98 55.6
CDX89603 Canola cytosol 64.56 55.23
HORVU7Hr1G108680.1 Barley nucleus 46.84 43.7
HORVU3Hr1G110200.1 Barley extracellular 29.54 32.56
HORVU7Hr1G059900.4 Barley cytosol 26.58 29.3
HORVU7Hr1G093120.4 Barley cytosol 28.69 28.45
HORVU6Hr1G067060.3 Barley nucleus, plastid 28.69 21.18
HORVU1Hr1G050480.5 Barley cytosol, nucleus 26.58 20.13
Protein Annotations
EMBL:AK373276EnsemblPlants:HORVU6Hr1G028520.1EnsemblPlantsGene:HORVU6Hr1G028520InterPro:DUF597PANTHER:PTHR31065PANTHER:PTHR31065:SF11
PFAM:PF04640UniParc:UPI000200835CUniProt:F2EAV1MapMan:15.5.43::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EAV1]
Coordinates
chrchr6H:-:112906760..112908552
Molecular Weight (calculated)
27189.5 Da
IEP (calculated)
8.382
GRAVY (calculated)
-0.530
Length
237 amino acids
Sequence
(BLAST)
001: MHQQAMWKPA WLEALSTEKF FVACSFHEHA KKNEKNICCL DCCTSICPHC VATHRVHRLL QVRRYVYHDV VRLEDLEKLI DCSGVQSYTI NSSKVVFLKK
101: RPQNRQFKGS GNICTSCDRS LQEPYFYCSL DCKVEYILRK KKDLSAYLRP CKILQLGPDF FIPHDADDET TQSTLVDADE PMGSSDSDNL SAPYTNFVRK
201: KRSGPYICAR SANRVSDDDM ATNMSRRKGV PQRSPLC
Best Arabidopsis Sequence Match ( AT2G12646.1 )
(BLAST)
001: MGIQKPAWLD ALYAEKFFVG CPYHETAKKN ERNVCCLDCC TSLCPHCVPS HRFHRLLQVR RYVYHDVVRL EDLQKLIDCS NVQAYTINSA KVVFIKKRPQ
101: NRQFKGAGNY CTSCDRSLQE PYIHCSLGCK VDFVMKRYRD ITPFLKPCHT LTLGPDYIIP QDLLTDDEVA AYETPRSTVV DGDESMSWSS ASSDNNNAGA
201: AAAYAATTTH VVRKKRTGFC LCAKSANSYK EVSEDPDDIS ACINRRKGVP QRSPLC
Arabidopsis Description
PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3Q4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.