Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09414 | Canola | cytosol | 81.08 | 81.82 |
| CDY36264 | Canola | nucleus | 69.82 | 80.73 |
| CDY17645 | Canola | nucleus | 77.93 | 74.25 |
| PGSC0003DMT400075780 | Potato | nucleus | 45.05 | 49.02 |
| Solyc04g008090.2.1 | Tomato | cytosol | 44.14 | 46.01 |
| VIT_01s0011g06060.t01 | Wine grape | nucleus | 50.9 | 45.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 34.58 |
| KRH49692 | Soybean | nucleus | 32.43 | 32.0 |
| KRH60448 | Soybean | nucleus | 33.33 | 31.09 |
| KRH41746 | Soybean | nucleus | 32.88 | 30.67 |
| AT1G32700.1 | Thale cress | cytosol | 28.83 | 30.05 |
| AT4G17900.1 | Thale cress | nucleus | 29.73 | 29.07 |
| AT1G43000.2 | Thale cress | cytosol | 28.83 | 28.7 |
| AT3G60670.1 | Thale cress | cytosol | 31.53 | 28.57 |
| AT1G31040.1 | Thale cress | nucleus | 29.73 | 27.16 |
| AT5G46710.1 | Thale cress | nucleus | 27.03 | 26.55 |
| EES07500 | Sorghum | nucleus | 23.87 | 26.5 |
| TraesCS6A01G248200.1 | Wheat | cytosol | 23.87 | 26.11 |
| TraesCS6D01G230300.1 | Wheat | cytosol | 23.87 | 26.11 |
| TraesCS6B01G276500.1 | Wheat | cytosol | 22.97 | 25.76 |
| Zm00001d051376_P001 | Maize | cytosol | 22.97 | 25.76 |
| AT2G12646.1 | Thale cress | nucleus | 28.38 | 24.61 |
| AT2G27930.5 | Thale cress | plastid | 21.17 | 24.48 |
| Os02t0661400-00 | Rice | cytosol | 24.77 | 24.34 |
| AT1G21000.1 | Thale cress | cytosol | 25.68 | 23.17 |
| AT1G76590.1 | Thale cress | cytosol | 25.23 | 22.86 |
Protein Annotations
| MapMan:15.5.43 | EntrezGene:5007863 | UniProt:A0A178VMH7 | UniProt:A8MQN6 | ProteinID:AEC05503.1 | ArrayExpress:AT2G01818 |
| EnsemblPlantsGene:AT2G01818 | RefSeq:AT2G01818 | TAIR:AT2G01818 | RefSeq:AT2G01818-TAIR-G | EnsemblPlants:AT2G01818.1 | TAIR:AT2G01818.1 |
| InterPro:DUF597 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008270 | InterPro:IPR000315 | RefSeq:NP_001077867.1 | ProteinID:OAP07680.1 | PFAM:PF04640 |
| PO:PO:0000293 | PFscan:PS50119 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF15 | UniParc:UPI0001505728 | InterPro:Znf_B-box |
Description
PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A8MQN6]
Coordinates
chr2:-:353344..355594
Molecular Weight (calculated)
25906.1 Da
IEP (calculated)
8.644
GRAVY (calculated)
-0.583
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLSEKRRSE EVWIETLLNS EFFGICMNHK YLRKNEKNVF CIDCNVEICR HCCNTVTDSH FLHRRLQICK YVYQDVIRLL EIQNYFDCSE IQTYKINGEK
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.