Factsheet for VIT_01s0011g06060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075780	Potato	nucleus	51.22	61.76
Solyc04g008090.2.1	Tomato	cytosol	52.03	60.09
CDY36264	Canola	nucleus	43.5	55.73
CDY17645	Canola	nucleus	50.0	52.79
AT2G01818.1	Thale cress	nucleus	45.94	50.9
CDY09414	Canola	cytosol	45.12	50.45
VIT_00s0233g00100.t01	Wine grape	cytosol	26.02	47.06
GSMUA_AchrUn_...	Banana	nucleus	31.3	35.98
KRH49692	Soybean	nucleus	30.49	33.33
VIT_06s0061g00880.t01	Wine grape	cytosol	17.89	33.08
VIT_02s0154g00150.t01	Wine grape	nucleus	31.71	31.97
KRH41746	Soybean	nucleus	30.49	31.51
KRH60448	Soybean	nucleus	30.49	31.51
VIT_03s0063g02240.t01	Wine grape	extracellular	30.08	30.71
VIT_15s0048g00580.t01	Wine grape	nucleus	30.08	29.6
VIT_01s0011g01410.t01	Wine grape	nucleus	30.49	28.74
VIT_16s0039g01560.t01	Wine grape	nucleus	26.83	28.57
EES07500	Sorghum	nucleus	23.17	28.5
VIT_11s0118g00600.t01	Wine grape	nucleus	28.05	28.16
TraesCS6A01G248200.1	Wheat	cytosol	23.17	28.08
TraesCS6D01G230300.1	Wheat	cytosol	23.17	28.08
Zm00001d051376_P001	Maize	cytosol	22.36	27.78
TraesCS6B01G276500.1	Wheat	cytosol	22.36	27.78
Os02t0661400-00	Rice	cytosol	24.39	26.55
VIT_08s0007g04560.t01	Wine grape	cytosol	24.8	26.52
VIT_02s0012g01400.t01	Wine grape	nucleus	28.05	26.34
VIT_18s0122g00320.t01	Wine grape	cytosol	25.61	19.15

Protein Annotations

ArrayExpress:VIT_01s0011g06060	EMBL:FN595752	EnsemblPlants:VIT_01s0011g06060.t01	EnsemblPlantsGene:VIT_01s0011g06060	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:DUF597	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31065	PANTHER:PTHR31065:SF15	PFAM:PF04640	PFscan:PS50119	ProteinID:CBI26802
ProteinID:CBI26802.3	unigene:Vvi.21793	UniParc:UPI0001BE2D8E	UniProt:D7T8I1	MapMan:15.5.43	:

Description

No Description!

Coordinates

chr1:-:5829346..5832049

Molecular Weight (calculated)

28064.1 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.522

Length

246 amino acids

Sequence
(BLAST)

001: MRSTVSTSSI SPPNCKNFED LKMVGCRILL KNKADWLSTL LHSKFFDTCG DHRDLRKSEK NVFCIDCNLC FCKHCVTSSG HCLHRRLKIC KYVYHDVVRL
101: QDMQQHLDCS KIQTYKINGE KAVHLNPRPQ SKDCKASKPK GGASCEACGR YIQDLPNRFC SIACKVLIFA EKFKDHNSKV VPYPVQEFAH LSLKESVDME
201: VNLKEKELSS SLADSPMEIE TQTSSALKPK KQLHKRKGIP RRSPLF

Best Arabidopsis Sequence Match ( AT2G01818.1 )
(BLAST)

001: MNLSEKRRSE EVWIETLLNS EFFGICMNHK YLRKNEKNVF CIDCNVEICR HCCNTVTDSH FLHRRLQICK YVYQDVIRLL EIQNYFDCSE IQTYKINGEK
101: AIHLNSRPQA KDARPSTKAK NGASCVTCKR YIQDHPNLFC SISCKISTPS KKHKFCFSPK LEQSVLEKEH STQEGSLEEK KSCTSSLTDV SEDSEVLLSD
201: FSFRPLLRIL KRKGISRRSP FY

Arabidopsis Description

PLATZ transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A8MQN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.