Factsheet for VIT_02s0154g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0233g00100.t01	Wine grape	cytosol	54.1	97.06
VIT_15s0048g00580.t01	Wine grape	nucleus	67.62	66.0
GSMUA_Achr11P...	Banana	cytosol	53.28	55.79
AT3G60670.1	Thale cress	cytosol	53.28	53.06
CDY41149	Canola	cytosol, extracellular, nucleus	49.18	52.17
Bra014478.1-P	Field mustard	cytosol	52.87	52.02
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	48.77	51.74
CDX89067	Canola	cytosol	52.46	51.61
VIT_03s0063g02240.t01	Wine grape	extracellular	50.41	51.04
CDY48369	Canola	cytosol	52.05	51.0
CDX71792	Canola	cytosol	50.0	50.21
VIT_11s0118g00600.t01	Wine grape	nucleus	49.18	48.98
KRH28037	Soybean	cytosol, nucleus, plastid	48.36	48.56
VIT_01s0011g01410.t01	Wine grape	nucleus	45.08	42.15
VIT_06s0061g00880.t01	Wine grape	cytosol	20.49	37.59
VIT_16s0039g01560.t01	Wine grape	nucleus	31.97	33.77
VIT_01s0011g06060.t01	Wine grape	nucleus	31.97	31.71
VIT_02s0012g01400.t01	Wine grape	nucleus	32.38	30.15
VIT_08s0007g04560.t01	Wine grape	cytosol	26.23	27.83
VIT_18s0122g00320.t01	Wine grape	cytosol	30.33	22.49

Protein Annotations

EntrezGene:100247272	wikigene:100247272	EntrezGene:100852507	wikigene:100852507	MapMan:15.5.43	ProteinID:CCB56501
ProteinID:CCB56501.1	InterPro:DUF597	UniProt:F6HP95	EMBL:FN596001	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	EntrezGene:LOC100247272
wikigene:LOC100247272	EntrezGene:LOC100852507	wikigene:LOC100852507	PFAM:PF04640	PFscan:PS50119	PANTHER:PTHR31065
PANTHER:PTHR31065:SF1	UniParc:UPI000210828C	ArrayExpress:VIT_02s0154g00150	EnsemblPlantsGene:VIT_02s0154g00150	EnsemblPlants:VIT_02s0154g00150.t01	RefSeq:XP_003631448
RefSeq:XP_003631448.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:4949210..4950534

Molecular Weight (calculated)

27496.4 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.143

Length

244 amino acids

Sequence
(BLAST)

001: MVGFGCDIPH WLEILLGEKF FNACVVHECA KKNEKNIFCL DCCTSICPHC LLPHRHHRLL QIRRYVYHDV IRLDDAQKLM DCSLVQSYTT NSAKVVFLNQ
101: RPMSRPFRGS GNLCYTCDRS LQDPYLFCSL ACKVRFALKF IINLLRFLHL ARGEAFSELD DRQMTPESVL DSPVSLRTSS GSSSTGGAVS CRALACTATT
201: EFVKKKRSSV SVPRFPFRPI LSPTSDNAGG INRRKGVPHR SPLH

Best Arabidopsis Sequence Match ( AT3G60670.1 )
(BLAST)

001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY

Arabidopsis Description

At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.