Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014478.1-P | Field mustard | cytosol | 98.79 | 98.79 |
| CDY48369 | Canola | cytosol | 96.37 | 95.98 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 81.85 | 88.26 |
| CDX71792 | Canola | cytosol | 84.27 | 86.01 |
| AT3G60670.1 | Thale cress | cytosol | 81.45 | 82.45 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 36.69 | 66.91 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 55.24 | 54.8 |
| KRG88921 | Soybean | nucleus | 52.82 | 54.13 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 51.61 | 52.46 |
| GSMUA_Achr11P... | Banana | cytosol | 47.98 | 51.07 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.79 | 48.4 |
| KRH75326 | Soybean | extracellular, plasma membrane | 53.63 | 48.01 |
| CDX98234 | Canola | cytosol | 32.66 | 47.09 |
| CDX81439 | Canola | cytosol | 43.95 | 42.58 |
| CDY37203 | Canola | cytosol | 43.55 | 42.35 |
| CDY12444 | Canola | nucleus | 39.52 | 40.83 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 39.92 | 40.74 |
| CDX93111 | Canola | cytosol | 45.16 | 40.43 |
| CDX89603 | Canola | cytosol | 45.16 | 40.43 |
| CDY27171 | Canola | nucleus | 39.11 | 40.42 |
| CDY01500 | Canola | nucleus | 31.45 | 36.45 |
| CDY02353 | Canola | mitochondrion, nucleus | 27.02 | 36.22 |
| CDX90437 | Canola | nucleus | 31.05 | 35.98 |
| CDY30518 | Canola | cytosol | 27.02 | 35.08 |
| CDY43172 | Canola | nucleus | 28.23 | 34.83 |
| CDX78810 | Canola | nucleus | 31.85 | 34.8 |
| CDY44504 | Canola | nucleus | 31.45 | 34.36 |
| CDY72135 | Canola | cytosol, nucleus | 29.44 | 33.95 |
| CDX76551 | Canola | nucleus | 30.65 | 33.93 |
| CDY66745 | Canola | nucleus | 30.24 | 33.63 |
| CDX71409 | Canola | nucleus | 25.4 | 33.51 |
| CDY08880 | Canola | nucleus | 30.24 | 33.48 |
| CDY04518 | Canola | nucleus | 25.4 | 33.33 |
| CDX87686 | Canola | nucleus | 30.24 | 32.47 |
| CDY03199 | Canola | nucleus | 29.44 | 32.44 |
| CDY35177 | Canola | nucleus | 29.84 | 32.31 |
| CDY69910 | Canola | nucleus | 29.44 | 32.3 |
| CDY36264 | Canola | nucleus | 25.0 | 32.29 |
| CDY69918 | Canola | nucleus | 29.03 | 31.86 |
| CDX87684 | Canola | nucleus | 29.44 | 31.06 |
| CDY09414 | Canola | cytosol | 27.02 | 30.45 |
| CDY17645 | Canola | nucleus | 28.23 | 30.04 |
| CDX88300 | Canola | nucleus | 28.23 | 29.54 |
| CDX87583 | Canola | nucleus | 28.23 | 29.41 |
| CDX68093 | Canola | nucleus | 28.23 | 29.29 |
| CDY01340 | Canola | cytosol | 27.42 | 29.18 |
| CDY04591 | Canola | cytosol | 28.63 | 29.1 |
| CDY29486 | Canola | cytosol | 28.23 | 28.69 |
| CDY00356 | Canola | cytosol | 27.82 | 28.28 |
| CDY33661 | Canola | cytosol | 27.42 | 27.98 |
| CDX85958 | Canola | nucleus | 27.02 | 26.8 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 30.65 | 26.76 |
| CDY44664 | Canola | plasma membrane | 30.65 | 25.85 |
| CDX96610 | Canola | cytosol | 27.42 | 25.76 |
| CDY06424 | Canola | cytosol | 20.56 | 22.37 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 28.23 | 19.23 |
Protein Annotations
| EnsemblPlants:CDX89067 | EnsemblPlantsGene:GSBRNA2T00149194001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | PFAM:PF04640 |
| ProteinID:CDX89067 | ProteinID:CDX89067.1 | SEG:seg | UniParc:UPI0004EF3AD1 | MapMan:15.5.43 | : |
Description
BnaA04g01190D
Coordinates
chrLK031857:-:874026..875814
Molecular Weight (calculated)
27938.5 Da
IEP (calculated)
8.043
GRAVY (calculated)
-0.236
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGSILQME PKDFPAWLEV LLKEKFFNAC LDHEDVKKNE KNILCIDCCL SICPHCLPSH NSHRLLQIRR YVYNDVLRVE DGSKLMDCSL IQPYITNSSK
101: VVFINERPHS RQFRGSGNFC YTCDRSLQSP YVFCSLSCKI SDVIMRQRGL SGFLHVCNFL QLTDEGATST TPSSTLEATE SDGDVGVDMF WCQALACTAS
201: TEVVRKKRSS LTATCRRVTT AVASANTEAP VNFFNRRKNT PPQRAPLY
101: VVFINERPHS RQFRGSGNFC YTCDRSLQSP YVFCSLSCKI SDVIMRQRGL SGFLHVCNFL QLTDEGATST TPSSTLEATE SDGDVGVDMF WCQALACTAS
201: TEVVRKKRSS LTATCRRVTT AVASANTEAP VNFFNRRKNT PPQRAPLY
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.