Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015731.1-P | Field mustard | nucleus | 99.58 | 99.58 |
| CDX88300 | Canola | nucleus | 98.74 | 99.16 |
| CDX68093 | Canola | nucleus | 92.44 | 92.05 |
| AT1G76590.1 | Thale cress | cytosol | 89.5 | 86.94 |
| CDX85958 | Canola | nucleus | 89.5 | 85.2 |
| CDY29486 | Canola | cytosol | 83.19 | 81.15 |
| CDY04591 | Canola | cytosol | 83.19 | 81.15 |
| CDY01340 | Canola | cytosol | 78.57 | 80.26 |
| CDY33661 | Canola | cytosol | 81.93 | 80.25 |
| CDY00356 | Canola | cytosol | 80.67 | 78.69 |
| CDX96610 | Canola | cytosol | 83.19 | 75.0 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 52.52 | 67.93 |
| PGSC0003DMT400025721 | Potato | plastid | 49.16 | 67.24 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 54.62 | 64.36 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 60.08 | 63.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.36 | 62.87 |
| CDX71409 | Canola | nucleus | 41.6 | 52.66 |
| CDY04518 | Canola | nucleus | 41.6 | 52.38 |
| CDY01500 | Canola | nucleus | 47.06 | 52.34 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 52.94 | 52.07 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 52.94 | 52.07 |
| CDX90437 | Canola | nucleus | 46.22 | 51.4 |
| Os06t0624900-01 | Rice | cytosol | 54.62 | 51.38 |
| CDY08880 | Canola | nucleus | 48.32 | 51.34 |
| CDX76551 | Canola | nucleus | 48.32 | 51.34 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 52.1 | 51.24 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 51.26 | 51.05 |
| OQU76729 | Sorghum | cytosol, plastid | 53.78 | 50.0 |
| CDY44504 | Canola | nucleus | 47.48 | 49.78 |
| CDX78810 | Canola | nucleus | 47.48 | 49.78 |
| CDY30518 | Canola | cytosol | 39.5 | 49.21 |
| CDY72135 | Canola | cytosol, nucleus | 41.6 | 46.05 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 63.03 | 45.59 |
| CDY69918 | Canola | nucleus | 42.86 | 45.13 |
| CDY69910 | Canola | nucleus | 42.86 | 45.13 |
| CDY03199 | Canola | nucleus | 42.44 | 44.89 |
| CDY35177 | Canola | nucleus | 42.86 | 44.54 |
| CDY66745 | Canola | nucleus | 41.6 | 44.39 |
| CDX87686 | Canola | nucleus | 42.02 | 43.29 |
| CDY06424 | Canola | cytosol | 40.76 | 42.54 |
| CDX87684 | Canola | nucleus | 41.18 | 41.7 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 49.58 | 41.55 |
| CDY44664 | Canola | plasma membrane | 50.0 | 40.48 |
| CDX98234 | Canola | cytosol | 26.47 | 36.63 |
| CDY27171 | Canola | nucleus | 31.93 | 31.67 |
| CDY12444 | Canola | nucleus | 31.51 | 31.25 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 44.96 | 29.4 |
| CDX81439 | Canola | cytosol | 31.51 | 29.3 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 28.15 | 29.13 |
| CDY37203 | Canola | cytosol | 31.09 | 29.02 |
| CDY43172 | Canola | nucleus | 24.37 | 28.86 |
| CDX71792 | Canola | cytosol | 28.99 | 28.4 |
| CDX89067 | Canola | cytosol | 29.41 | 28.23 |
| CDY36264 | Canola | nucleus | 22.69 | 28.12 |
| CDY48369 | Canola | cytosol | 28.99 | 27.71 |
| CDY02353 | Canola | mitochondrion, nucleus | 21.01 | 27.03 |
| CDY09414 | Canola | cytosol | 24.79 | 26.82 |
| CDX93111 | Canola | cytosol | 31.09 | 26.71 |
| CDX89603 | Canola | cytosol | 30.67 | 26.35 |
| CDY17645 | Canola | nucleus | 24.79 | 25.32 |
Protein Annotations
| EnsemblPlants:CDX87583 | EnsemblPlantsGene:GSBRNA2T00146588001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 |
| ProteinID:CDX87583 | ProteinID:CDX87583.1 | UniParc:UPI0004EDD336 | MapMan:15.5.43 | : | : |
Description
BnaA07g32900D
Coordinates
chrLK031850:-:1337203..1338806
Molecular Weight (calculated)
26827.9 Da
IEP (calculated)
8.955
GRAVY (calculated)
-0.529
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRAEEESPP PWLIPLLRAN YFVPCSIHAD SNKSECNMFC LDCTSSSFCS YCLTNHKNHR VLQIRRSSYH NVVRVNEIQK YIDISCVQTY IINSARIVFL
101: NERPQPRIGK GVTNTCEICC RSLLDSFRFC SLGCKLGGMK RGNQSLTFSL KGKHGREYQA GEDSDEATTP TKIRKTCAFN RLMNGLSIST AKSDYFSGDQ
201: WSSSSGDESG FNLSPGTPPI YNHRNSSRRK GVPHRAPF
101: NERPQPRIGK GVTNTCEICC RSLLDSFRFC SLGCKLGGMK RGNQSLTFSL KGKHGREYQA GEDSDEATTP TKIRKTCAFN RLMNGLSIST AKSDYFSGDQ
201: WSSSSGDESG FNLSPGTPPI YNHRNSSRRK GVPHRAPF
001: MGPMMMRAEE DNYNLNPPPW LIPMLRANYF IPCSIHAASN KSECNMFCLD CSSEAFCSYC LLNHRNHRVL QIRRSSYHNV VRVNEIQKYI DISCVQTYII
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF
Arabidopsis Description
At1g76590 [Source:UniProtKB/TrEMBL;Acc:Q2HIW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.