Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015731.1-P | Field mustard | nucleus | 99.58 | 99.16 |
| CDX87583 | Canola | nucleus | 99.16 | 98.74 |
| CDX68093 | Canola | nucleus | 92.41 | 91.63 |
| AT1G76590.1 | Thale cress | cytosol | 89.45 | 86.53 |
| CDX85958 | Canola | nucleus | 89.45 | 84.8 |
| CDY29486 | Canola | cytosol | 83.12 | 80.74 |
| CDY04591 | Canola | cytosol | 83.12 | 80.74 |
| CDY01340 | Canola | cytosol | 78.48 | 79.83 |
| CDY33661 | Canola | cytosol | 81.43 | 79.42 |
| CDY00356 | Canola | cytosol | 80.59 | 78.28 |
| CDX96610 | Canola | cytosol | 82.28 | 73.86 |
| GSMUA_Achr7P20650_001 | Banana | cytosol | 52.32 | 67.39 |
| PGSC0003DMT400025721 | Potato | plastid | 49.37 | 67.24 |
| GSMUA_Achr6P36360_001 | Banana | cytosol | 54.43 | 63.86 |
| GSMUA_Achr9P12280_001 | Banana | cytosol | 59.92 | 62.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.16 | 62.38 |
| CDY01500 | Canola | nucleus | 47.26 | 52.34 |
| CDX71409 | Canola | nucleus | 41.35 | 52.13 |
| TraesCS7D01G390300.1 | Wheat | cytosol | 53.16 | 52.07 |
| TraesCS7A01G394800.1 | Wheat | cytosol | 53.16 | 52.07 |
| CDY04518 | Canola | nucleus | 41.35 | 51.85 |
| CDX90437 | Canola | nucleus | 46.41 | 51.4 |
| Os06t0624900-01 | Rice | cytosol | 54.85 | 51.38 |
| CDY08880 | Canola | nucleus | 48.52 | 51.34 |
| CDX76551 | Canola | nucleus | 48.52 | 51.34 |
| TraesCS7B01G296800.1 | Wheat | cytosol | 52.32 | 51.24 |
| HORVU7Hr1G093120.4 | Barley | cytosol | 51.48 | 51.05 |
| OQU76729 | Sorghum | cytosol, plastid | 54.01 | 50.0 |
| CDY44504 | Canola | nucleus | 47.68 | 49.78 |
| CDX78810 | Canola | nucleus | 47.68 | 49.78 |
| CDY30518 | Canola | cytosol | 39.24 | 48.69 |
| CDY72135 | Canola | cytosol, nucleus | 41.77 | 46.05 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 62.87 | 45.29 |
| CDY69918 | Canola | nucleus | 43.04 | 45.13 |
| CDY69910 | Canola | nucleus | 43.04 | 45.13 |
| CDY03199 | Canola | nucleus | 42.62 | 44.89 |
| CDY35177 | Canola | nucleus | 43.04 | 44.54 |
| CDY66745 | Canola | nucleus | 41.77 | 44.39 |
| CDX87686 | Canola | nucleus | 42.19 | 43.29 |
| CDY06424 | Canola | cytosol | 40.93 | 42.54 |
| CDX87684 | Canola | nucleus | 41.35 | 41.7 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 49.37 | 41.2 |
| CDY44664 | Canola | plasma membrane | 49.79 | 40.14 |
| CDX98234 | Canola | cytosol | 26.58 | 36.63 |
| CDY27171 | Canola | nucleus | 32.07 | 31.67 |
| CDY12444 | Canola | nucleus | 31.65 | 31.25 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 45.15 | 29.4 |
| CDX81439 | Canola | cytosol | 31.65 | 29.3 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 28.27 | 29.13 |
| CDY37203 | Canola | cytosol | 31.22 | 29.02 |
| CDY43172 | Canola | nucleus | 24.47 | 28.86 |
| CDX71792 | Canola | cytosol | 29.11 | 28.4 |
| CDX89067 | Canola | cytosol | 29.54 | 28.23 |
| CDY36264 | Canola | nucleus | 22.78 | 28.12 |
| CDY48369 | Canola | cytosol | 29.11 | 27.71 |
| CDY02353 | Canola | mitochondrion, nucleus | 21.1 | 27.03 |
| CDY09414 | Canola | cytosol | 24.89 | 26.82 |
| CDX93111 | Canola | cytosol | 31.22 | 26.71 |
| CDX89603 | Canola | cytosol | 30.8 | 26.35 |
| CDY17645 | Canola | nucleus | 24.89 | 25.32 |
Protein Annotations
| EnsemblPlants:CDX88300 | EnsemblPlantsGene:GSBRNA2T00147802001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF12 | PFAM:PF04640 |
| ProteinID:CDX88300 | ProteinID:CDX88300.1 | UniParc:UPI0004EE7370 | MapMan:15.5.43 | : | : |
Description
BnaC06g37440D
Coordinates
chrLK031855:+:235782..237392
Molecular Weight (calculated)
26711.7 Da
IEP (calculated)
8.955
GRAVY (calculated)
-0.509
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAEEESPPP WLIPLLRANY FVPCSIHADS NKSECNMFCL DCTSSSFCSY CLTNHKNHRV LQIRRSSYHN VVRVNEIQKY IDISCVQTYI INSARIVFLN
101: ERPQPRIGKG VTNTCEICCR SLLDSFRFCS LGCKLGGMKR GNQSLTFSLK GKHGREYQAG EDSDEATTPT KIRKTCAFNR LMSGLSISTA KSDYFSGDQW
201: SSSSGDESGF NLSPVTPPIY NHRNSSRRKG VPHRAPF
101: ERPQPRIGKG VTNTCEICCR SLLDSFRFCS LGCKLGGMKR GNQSLTFSLK GKHGREYQAG EDSDEATTPT KIRKTCAFNR LMSGLSISTA KSDYFSGDQW
201: SSSSGDESGF NLSPVTPPIY NHRNSSRRKG VPHRAPF
001: MGPMMMRAEE DNYNLNPPPW LIPMLRANYF IPCSIHAASN KSECNMFCLD CSSEAFCSYC LLNHRNHRVL QIRRSSYHNV VRVNEIQKYI DISCVQTYII
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF
Arabidopsis Description
At1g76590 [Source:UniProtKB/TrEMBL;Acc:Q2HIW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.