Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017531.1-P | Field mustard | nucleus | 99.56 | 99.56 |
| CDY03199 | Canola | nucleus | 93.89 | 95.56 |
| CDY69918 | Canola | nucleus | 82.1 | 83.19 |
| CDY69910 | Canola | nucleus | 81.66 | 82.74 |
| CDY01500 | Canola | nucleus | 69.0 | 73.83 |
| CDX78810 | Canola | nucleus | 72.93 | 73.57 |
| CDX90437 | Canola | nucleus | 68.56 | 73.36 |
| CDY44504 | Canola | nucleus | 72.49 | 73.13 |
| CDY08880 | Canola | nucleus | 69.43 | 70.98 |
| CDX76551 | Canola | nucleus | 69.43 | 70.98 |
| CDY66745 | Canola | nucleus | 69.0 | 70.85 |
| CDX87686 | Canola | nucleus | 70.74 | 70.13 |
| CDY72135 | Canola | cytosol, nucleus | 62.01 | 66.05 |
| CDX87684 | Canola | nucleus | 66.81 | 65.11 |
| AT5G46710.1 | Thale cress | nucleus | 64.19 | 65.04 |
| KRH74408 | Soybean | nucleus | 64.19 | 62.29 |
| KRH39550 | Soybean | nucleus | 64.19 | 62.29 |
| KRH75604 | Soybean | nucleus | 56.77 | 61.9 |
| PGSC0003DMT400045164 | Potato | nucleus | 58.52 | 59.03 |
| Solyc08g076860.2.1 | Tomato | nucleus | 58.52 | 58.77 |
| PGSC0003DMT400046007 | Potato | cytosol | 55.9 | 57.14 |
| PGSC0003DMT400019836 | Potato | nucleus | 55.02 | 56.5 |
| Solyc08g005100.2.1 | Tomato | cytosol | 55.02 | 56.25 |
| Solyc06g061240.2.1 | Tomato | nucleus | 54.59 | 55.8 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 58.95 | 54.44 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 58.52 | 53.82 |
| Os02t0692700-01 | Rice | nucleus | 60.26 | 53.7 |
| KXG30975 | Sorghum | nucleus | 58.95 | 53.57 |
| Os04t0591100-01 | Rice | nucleus | 58.08 | 53.41 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 57.21 | 53.25 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 57.21 | 53.25 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 56.77 | 52.85 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 60.26 | 52.67 |
| EES12755 | Sorghum | nucleus | 57.64 | 52.59 |
| Zm00001d051511_P001 | Maize | nucleus | 56.77 | 51.79 |
| Zm00001d026047_P002 | Maize | nucleus | 57.21 | 51.78 |
| Zm00001d017682_P001 | Maize | nucleus | 56.77 | 51.59 |
| Zm00001d002489_P001 | Maize | nucleus | 57.64 | 51.56 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 58.52 | 48.73 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 60.26 | 48.59 |
| CDY44664 | Canola | plasma membrane | 60.26 | 46.94 |
| CDX71409 | Canola | nucleus | 36.24 | 44.15 |
| CDY30518 | Canola | cytosol | 36.68 | 43.98 |
| CDY04518 | Canola | nucleus | 35.81 | 43.39 |
| CDY01340 | Canola | cytosol | 44.1 | 43.35 |
| CDX88300 | Canola | nucleus | 44.54 | 43.04 |
| CDX87583 | Canola | nucleus | 44.54 | 42.86 |
| CDX68093 | Canola | nucleus | 44.1 | 42.26 |
| CDY04591 | Canola | cytosol | 44.54 | 41.8 |
| CDY33661 | Canola | cytosol | 44.1 | 41.56 |
| CDY29486 | Canola | cytosol | 44.1 | 41.39 |
| CDY00356 | Canola | cytosol | 44.1 | 41.39 |
| CDX85958 | Canola | nucleus | 43.67 | 40.0 |
| CDX96610 | Canola | cytosol | 43.23 | 37.5 |
| CDX98234 | Canola | cytosol | 27.95 | 37.21 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 48.91 | 34.89 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 52.4 | 32.97 |
| CDY27171 | Canola | nucleus | 33.62 | 32.08 |
| CDY36264 | Canola | nucleus | 26.64 | 31.77 |
| CDY12444 | Canola | nucleus | 33.19 | 31.67 |
| CDY06424 | Canola | cytosol | 31.44 | 31.58 |
| CDX81439 | Canola | cytosol | 34.93 | 31.25 |
| CDY37203 | Canola | cytosol | 34.5 | 30.98 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 30.57 | 30.43 |
| CDX89067 | Canola | cytosol | 32.31 | 29.84 |
| CDY48369 | Canola | cytosol | 32.31 | 29.72 |
| CDY17645 | Canola | nucleus | 30.13 | 29.61 |
| CDX71792 | Canola | cytosol | 30.57 | 28.81 |
| CDY09414 | Canola | cytosol | 27.07 | 28.18 |
| CDX93111 | Canola | cytosol | 34.06 | 28.16 |
| CDY43172 | Canola | nucleus | 24.45 | 27.86 |
| CDX89603 | Canola | cytosol | 33.62 | 27.8 |
| CDY02353 | Canola | mitochondrion, nucleus | 21.83 | 27.03 |
Protein Annotations
| EnsemblPlants:CDY35177 | EnsemblPlantsGene:GSBRNA2T00058074001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| ProteinID:CDY35177 | ProteinID:CDY35177.1 | SEG:seg | UniParc:UPI0004EF3376 | UniProt:A0A078HBQ7 | MapMan:15.5.43 |
Description
BnaA09g18140DBnaA09g18140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBQ7]
Coordinates
chrLK032347:-:320314..321645
Molecular Weight (calculated)
25860.7 Da
IEP (calculated)
8.625
GRAVY (calculated)
-0.706
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDHENPN REINPKNRTV MGGGGGEEEE GKWWPSWLKP LLKEPFFVQC NFHGHSPKSE CNMYCLDCTN GSLCSLCLAH HKDHRTIQIR RSSYHDVIRV
101: SEIQKHLDIF SIQTYVINSA KVVFLNERPQ PQPRPAKGVT NACNVCYRGL VDDCFRFCSL GCKVAGTSRS FRKRVKNAEM ESENSSNSSG VEDNIPNPQS
201: LTPSTPQLPS STSLRKRPRK GIPYQSPLQ
101: SEIQKHLDIF SIQTYVINSA KVVFLNERPQ PQPRPAKGVT NACNVCYRGL VDDCFRFCSL GCKVAGTSRS FRKRVKNAEM ESENSSNSSG VEDNIPNPQS
201: LTPSTPQLPS STSLRKRPRK GIPYQSPLQ
001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
Arabidopsis Description
At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.