Factsheet for Bra017531.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35177	Canola	nucleus	99.56	99.56
CDY03199	Canola	nucleus	93.45	95.11
Bra025003.1-P	Field mustard	nucleus	80.35	81.42
Bra012632.1-P	Field mustard	nucleus	67.69	72.43
Bra013266.1-P	Field mustard	nucleus	71.18	71.81
Bra022055.1-P	Field mustard	nucleus	69.0	70.85
Bra021029.1-P	Field mustard	nucleus	69.0	70.54
Bra022058.1-P	Field mustard	nucleus	67.25	67.25
AT5G46710.1	Thale cress	nucleus	63.76	64.6
KRH74408	Soybean	nucleus	63.76	61.86
KRH39550	Soybean	nucleus	63.76	61.86
KRH75604	Soybean	nucleus	56.33	61.43
Bra035494.1-P	Field mustard	nucleus	57.64	60.27
PGSC0003DMT400045164	Potato	nucleus	58.08	58.59
Solyc08g076860.2.1	Tomato	nucleus	58.08	58.33
PGSC0003DMT400046007	Potato	cytosol	55.46	56.7
PGSC0003DMT400019836	Potato	nucleus	54.59	56.05
Solyc08g005100.2.1	Tomato	cytosol	54.59	55.8
Solyc06g061240.2.1	Tomato	nucleus	54.15	55.36
TraesCS6B01G291400.1	Wheat	nucleus	58.95	54.44
TraesCS6D01G250500.1	Wheat	nucleus	58.52	53.82
Os02t0692700-01	Rice	nucleus	59.83	53.31
KXG30975	Sorghum	nucleus	58.52	53.17
Os04t0591100-01	Rice	nucleus	57.64	53.01
TraesCS2B01G469000.1	Wheat	cytosol	56.77	52.85
TraesCS2D01G447400.1	Wheat	cytosol	56.77	52.85
Bra003715.1-P	Field mustard	nucleus	37.99	52.73
TraesCS2A01G448300.1	Wheat	cytosol	56.33	52.44
VIT_02s0012g01400.t01	Wine grape	nucleus	59.83	52.29
EES12755	Sorghum	nucleus	57.21	52.19
Zm00001d051511_P001	Maize	nucleus	56.33	51.39
Zm00001d026047_P002	Maize	nucleus	56.77	51.38
Zm00001d017682_P001	Maize	nucleus	56.33	51.19
Zm00001d002489_P001	Maize	nucleus	57.21	51.17
Bra023280.1-P	Field mustard	mitochondrion	60.7	49.12
TraesCS6A01G264400.2	Wheat	nucleus	58.52	48.73
Bra012263.1-P	Field mustard	cytosol	39.3	45.23
Bra034379.1-P	Field mustard	nucleus	37.12	44.5
Bra011992.1-P	Field mustard	nucleus	35.37	42.86
Bra015731.1-P	Field mustard	nucleus	44.1	42.44
Bra025865.1-P	Field mustard	cytosol	43.67	40.98
Bra016441.1-P	Field mustard	cytosol	43.23	40.74
HORVU6Hr1G067060.3	Barley	nucleus, plastid	48.91	34.89
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	32.75	31.25
Bra037203.1-P	Field mustard	cytosol	34.06	30.59
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	30.57	30.43
Bra014478.1-P	Field mustard	cytosol	31.88	29.44
Bra014899.1-P	Field mustard	nucleus	31.44	29.27
Bra013149.1-P	Field mustard	cytosol	34.06	28.16
Bra023155.1-P	Field mustard	nucleus	24.89	17.54

Protein Annotations

EnsemblPlants:Bra017531.1	EnsemblPlants:Bra017531.1-P	EnsemblPlantsGene:Bra017531	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF8
PFAM:PF04640	SEG:seg	UniParc:UPI0002542452	UniProt:M4DM00	MapMan:15.5.43	:

Description

AT4G17900 (E=6e-078) | zinc-binding family protein

Coordinates

chrA09:+:16132331..16133603

Molecular Weight (calculated)

25846.6 Da

IEP (calculated)

8.493

GRAVY (calculated)

-0.704

Length

229 amino acids

Sequence
(BLAST)

001: MAIEDHENPN REINPKNRTV MGGGGGEEEE GKWWPSWLKP LLKEPFFVQC NFHGHSPKSE CNMYCLDCTN GSLCSLCLAH HKDHRTIQIR RSSYHDVIRV
101: SEIQNHLDIF SIQTYVINSA KVVFLNERPQ PQPRPAKGVT NACNVCYRGL VDDCFRFCSL GCKVAGTSRS FRKRVKNAEM ESENSSNSSG VEDNIPNPQS
201: LTPSTPQLPS STSLRKRPRK GIPYQSPLQ

Best Arabidopsis Sequence Match ( AT5G46710.1 )
(BLAST)

001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS

Arabidopsis Description

At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.