Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44504 | Canola | nucleus | 98.24 | 98.24 |
| CDX78810 | Canola | nucleus | 97.8 | 97.8 |
| Bra012632.1-P | Field mustard | nucleus | 86.78 | 92.06 |
| AT4G17900.1 | Thale cress | nucleus | 90.75 | 90.75 |
| Bra021029.1-P | Field mustard | nucleus | 87.67 | 88.84 |
| Bra025003.1-P | Field mustard | nucleus | 70.93 | 71.24 |
| Bra017531.1-P | Field mustard | nucleus | 71.81 | 71.18 |
| KRH75604 | Soybean | nucleus | 65.2 | 70.48 |
| KRH74408 | Soybean | nucleus | 73.13 | 70.34 |
| KRH39550 | Soybean | nucleus | 73.13 | 70.34 |
| Solyc08g076860.2.1 | Tomato | nucleus | 67.4 | 67.11 |
| PGSC0003DMT400045164 | Potato | nucleus | 66.96 | 66.96 |
| Bra035494.1-P | Field mustard | nucleus | 63.44 | 65.75 |
| PGSC0003DMT400046007 | Potato | cytosol | 64.76 | 65.62 |
| PGSC0003DMT400019836 | Potato | nucleus | 64.32 | 65.47 |
| Solyc06g061240.2.1 | Tomato | nucleus | 63.44 | 64.29 |
| Solyc08g005100.2.1 | Tomato | cytosol | 62.56 | 63.39 |
| Bra022055.1-P | Field mustard | nucleus | 62.11 | 63.23 |
| Bra022058.1-P | Field mustard | nucleus | 62.56 | 62.01 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 70.48 | 61.07 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 62.56 | 57.03 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 62.11 | 56.85 |
| Os02t0692700-01 | Rice | nucleus | 64.32 | 56.81 |
| Bra003715.1-P | Field mustard | nucleus | 40.97 | 56.36 |
| Os04t0591100-01 | Rice | nucleus | 61.67 | 56.22 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 60.79 | 56.1 |
| KXG30975 | Sorghum | nucleus | 62.11 | 55.95 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 60.35 | 55.69 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 60.35 | 55.69 |
| Zm00001d051511_P001 | Maize | nucleus | 59.91 | 54.18 |
| EES12755 | Sorghum | nucleus | 59.47 | 53.78 |
| Bra023280.1-P | Field mustard | mitochondrion | 66.96 | 53.71 |
| Zm00001d017682_P001 | Maize | nucleus | 59.47 | 53.57 |
| Zm00001d026047_P002 | Maize | nucleus | 59.47 | 53.36 |
| Zm00001d002489_P001 | Maize | nucleus | 59.91 | 53.12 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 61.67 | 50.91 |
| Bra012263.1-P | Field mustard | cytosol | 42.73 | 48.74 |
| Bra034379.1-P | Field mustard | nucleus | 39.65 | 47.12 |
| Bra015731.1-P | Field mustard | nucleus | 49.34 | 47.06 |
| Bra016441.1-P | Field mustard | cytosol | 49.78 | 46.5 |
| Bra025865.1-P | Field mustard | cytosol | 49.78 | 46.31 |
| Bra011992.1-P | Field mustard | nucleus | 37.44 | 44.97 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 51.1 | 36.14 |
| Bra014478.1-P | Field mustard | cytosol | 34.8 | 31.85 |
| Bra037203.1-P | Field mustard | cytosol | 35.24 | 31.37 |
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 31.72 | 31.3 |
| Bra038403.1-P | Field mustard | cytosol, extracellular, nucleus | 32.6 | 30.83 |
| Bra014899.1-P | Field mustard | nucleus | 32.16 | 29.67 |
| Bra013149.1-P | Field mustard | cytosol | 34.8 | 28.52 |
| Bra023155.1-P | Field mustard | nucleus | 24.23 | 16.92 |
Protein Annotations
| EnsemblPlants:Bra013266.1 | EnsemblPlants:Bra013266.1-P | EnsemblPlantsGene:Bra013266 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:DUF597 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 | SEG:seg | UniParc:UPI0002545CDA | UniProt:M4D9V6 |
| MapMan:15.5.43 | : | : | : | : | : |
Description
AT4G17900 (E=9e-116) | zinc-binding family protein
Coordinates
chrA01:+:4618713..4620353
Molecular Weight (calculated)
25765.0 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.645
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDQEKTI REIKPKNRRI MGAGGPEEED NRWPPWLKPL LKEQFFVHCK FHVDSHKSEC NMYCLDCTND PLCSLCLSHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDISG IQTYVINSAK VVFLNERPQP RPGKGVTNAC KVCYRSLVDD SFRFCSLGCK IAGSSRGFEK GRRNLAMESE DSGGGIGIGR NISNLQSFRP
201: STPPLTTSTS CRIAKRRKGI PHRSPMG
101: EIQKYLDISG IQTYVINSAK VVFLNERPQP RPGKGVTNAC KVCYRSLVDD SFRFCSLGCK IAGSSRGFEK GRRNLAMESE DSGGGIGIGR NISNLQSFRP
201: STPPLTTSTS CRIAKRRKGI PHRSPMG
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.