Factsheet for Bra012632.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90437	Canola	nucleus	99.53	99.53
Bra021029.1-P	Field mustard	nucleus	91.59	87.5
AT4G17900.1	Thale cress	nucleus	92.52	87.22
Bra013266.1-P	Field mustard	nucleus	92.06	86.78
KRH75604	Soybean	nucleus	68.22	69.52
Bra025003.1-P	Field mustard	nucleus	72.9	69.03
KRH39550	Soybean	nucleus	75.7	68.64
KRH74408	Soybean	nucleus	75.23	68.22
Bra017531.1-P	Field mustard	nucleus	72.43	67.69
Solyc08g076860.2.1	Tomato	nucleus	69.63	65.35
PGSC0003DMT400045164	Potato	nucleus	69.16	65.2
Bra035494.1-P	Field mustard	nucleus	65.89	64.38
PGSC0003DMT400046007	Potato	cytosol	66.36	63.39
PGSC0003DMT400019836	Potato	nucleus	65.42	62.78
Bra022055.1-P	Field mustard	nucleus	65.42	62.78
Solyc06g061240.2.1	Tomato	nucleus	65.42	62.5
Solyc08g005100.2.1	Tomato	cytosol	64.95	62.05
VIT_02s0012g01400.t01	Wine grape	nucleus	73.36	59.92
Bra022058.1-P	Field mustard	nucleus	64.02	59.83
TraesCS6B01G291400.1	Wheat	nucleus	66.36	57.26
TraesCS6D01G250500.1	Wheat	nucleus	66.36	57.03
Os02t0692700-01	Rice	nucleus	67.29	56.03
KXG30975	Sorghum	nucleus	65.89	55.95
TraesCS2D01G447400.1	Wheat	cytosol	63.08	54.88
Bra003715.1-P	Field mustard	nucleus	42.06	54.55
TraesCS2A01G448300.1	Wheat	cytosol	62.62	54.47
TraesCS2B01G469000.1	Wheat	cytosol	62.62	54.47
Zm00001d017682_P001	Maize	nucleus	64.02	54.37
Os04t0591100-01	Rice	nucleus	63.08	54.22
EES12755	Sorghum	nucleus	63.55	54.18
Zm00001d051511_P001	Maize	nucleus	63.08	53.78
Zm00001d002489_P001	Maize	nucleus	64.02	53.52
Zm00001d026047_P002	Maize	nucleus	63.08	53.36
Bra023280.1-P	Field mustard	mitochondrion	69.16	52.3
TraesCS6A01G264400.2	Wheat	nucleus	65.89	51.27
Bra012263.1-P	Field mustard	cytosol	44.39	47.74
Bra015731.1-P	Field mustard	nucleus	51.4	46.22
Bra016441.1-P	Field mustard	cytosol	52.34	46.09
Bra034379.1-P	Field mustard	nucleus	40.65	45.55
Bra025865.1-P	Field mustard	cytosol	51.87	45.49
Bra011992.1-P	Field mustard	nucleus	38.32	43.39
HORVU6Hr1G067060.3	Barley	nucleus, plastid	54.67	36.45
Bra007550.1-P	Field mustard	extracellular, nucleus, vacuole	33.64	31.3
Bra014478.1-P	Field mustard	cytosol	35.98	31.05
Bra037203.1-P	Field mustard	cytosol	36.92	30.98
Bra038403.1-P	Field mustard	cytosol, extracellular, nucleus	34.11	30.42
Bra014899.1-P	Field mustard	nucleus	33.64	29.27
Bra013149.1-P	Field mustard	cytosol	36.45	28.16
Bra023155.1-P	Field mustard	nucleus	24.77	16.31

Protein Annotations

EnsemblPlants:Bra012632.1	EnsemblPlants:Bra012632.1-P	EnsemblPlantsGene:Bra012632	InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF8
PFAM:PF04640	SEG:seg	UniParc:UPI0002540A0B	UniProt:M4D822	MapMan:15.5.43	:

Description

AT4G17900 (E=8e-103) | zinc-binding family protein

Coordinates

chrA03:+:23044898..23046556

Molecular Weight (calculated)

24263.1 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.620

Length

214 amino acids

Sequence
(BLAST)

001: MAIDDQENTI REFKPKNRRI MGAGGPEEED NRWPPWLKPL LKEHFFAHCK FHVDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKHLDISG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFSFCSLGCK IAGSSRGFEK GRKNLLMETE DSGCFSPSTP PLTASSSCRI
201: AKRRKGIPHR SPMG

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.