Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72135 | Canola | cytosol, nucleus | 93.01 | 99.07 |
| CDX87684 | Canola | nucleus | 91.7 | 89.36 |
| Bra022055.1-P | Field mustard | nucleus | 81.66 | 83.86 |
| Bra017531.1-P | Field mustard | nucleus | 67.25 | 67.25 |
| Bra012632.1-P | Field mustard | nucleus | 59.83 | 64.02 |
| Bra025003.1-P | Field mustard | nucleus | 62.45 | 63.27 |
| Bra013266.1-P | Field mustard | nucleus | 62.01 | 62.56 |
| Bra021029.1-P | Field mustard | nucleus | 59.39 | 60.71 |
| AT5G46710.1 | Thale cress | nucleus | 58.08 | 58.85 |
| KRH75604 | Soybean | nucleus | 52.4 | 57.14 |
| KRH39550 | Soybean | nucleus | 58.08 | 56.36 |
| KRH74408 | Soybean | nucleus | 58.08 | 56.36 |
| Solyc08g076860.2.1 | Tomato | nucleus | 54.59 | 54.82 |
| PGSC0003DMT400045164 | Potato | nucleus | 54.15 | 54.63 |
| PGSC0003DMT400046007 | Potato | cytosol | 53.28 | 54.46 |
| Solyc08g005100.2.1 | Tomato | cytosol | 53.28 | 54.46 |
| Bra035494.1-P | Field mustard | nucleus | 50.22 | 52.51 |
| PGSC0003DMT400019836 | Potato | nucleus | 51.09 | 52.47 |
| Solyc06g061240.2.1 | Tomato | nucleus | 50.66 | 51.79 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 57.64 | 50.38 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 53.71 | 49.6 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 53.28 | 49.0 |
| KXG30975 | Sorghum | nucleus | 53.71 | 48.81 |
| Bra003715.1-P | Field mustard | nucleus | 34.5 | 47.88 |
| Os02t0692700-01 | Rice | nucleus | 53.28 | 47.47 |
| Zm00001d051511_P001 | Maize | nucleus | 51.97 | 47.41 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 50.66 | 47.15 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 50.66 | 47.15 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 50.22 | 46.75 |
| Os04t0591100-01 | Rice | nucleus | 50.66 | 46.59 |
| Zm00001d017682_P001 | Maize | nucleus | 51.09 | 46.43 |
| EES12755 | Sorghum | nucleus | 49.78 | 45.42 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 53.28 | 44.36 |
| Zm00001d026047_P002 | Maize | nucleus | 48.91 | 44.27 |
| Bra012263.1-P | Field mustard | cytosol | 38.43 | 44.22 |
| Zm00001d002489_P001 | Maize | nucleus | 49.34 | 44.14 |
| Bra034379.1-P | Field mustard | nucleus | 36.24 | 43.46 |
| Bra011992.1-P | Field mustard | nucleus | 35.37 | 42.86 |
| Bra023280.1-P | Field mustard | mitochondrion | 52.84 | 42.76 |
| Bra015731.1-P | Field mustard | nucleus | 43.23 | 41.6 |
| Bra016441.1-P | Field mustard | cytosol | 43.67 | 41.15 |
| Bra025865.1-P | Field mustard | cytosol | 43.23 | 40.57 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 44.98 | 32.09 |
| Bra037203.1-P | Field mustard | cytosol | 34.06 | 30.59 |
| Bra014478.1-P | Field mustard | cytosol | 32.31 | 29.84 |
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 29.69 | 29.57 |
| Bra038403.1-P | Field mustard | cytosol, extracellular, nucleus | 30.57 | 29.17 |
| Bra014899.1-P | Field mustard | nucleus | 30.57 | 28.46 |
| Bra013149.1-P | Field mustard | cytosol | 33.62 | 27.8 |
| Bra023155.1-P | Field mustard | nucleus | 22.71 | 16.0 |
Protein Annotations
Description
AT4G17900 (E=8e-083) | zinc-binding family protein
Coordinates
chrA02:+:18944313..18945578
Molecular Weight (calculated)
25824.7 Da
IEP (calculated)
7.415
GRAVY (calculated)
-0.577
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIENHENPN QEIKPKSIRS MGVGGPEEEE NQWPPWLKPL LKEEHFFVQC DSHGDSPKNK CNMYCLDCTN GSFCPLCLEH HKDHRTIQIR RLSYHNVIRV
101: NEIQMHLDIL SVQTYVIDGA KVVFLNERPQ LERVRGVRVT NACDVCSRGL ADDCFCFCSL GCKVAGTSRS FEKGGEHTVM ESENSSNISG VENNIPNPQS
201: VNASTTVLPT STSLRKRPRK GIPYRSPLQ
101: NEIQMHLDIL SVQTYVIDGA KVVFLNERPQ LERVRGVRVT NACDVCSRGL ADDCFCFCSL GCKVAGTSRS FEKGGEHTVM ESENSSNISG VENNIPNPQS
201: VNASTTVLPT STSLRKRPRK GIPYRSPLQ
001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
Arabidopsis Description
At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.