Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021029.1-P | Field mustard | nucleus | 98.66 | 98.66 |
| CDX76551 | Canola | nucleus | 98.21 | 98.21 |
| CDY01500 | Canola | nucleus | 87.5 | 91.59 |
| CDX90437 | Canola | nucleus | 87.05 | 91.12 |
| AT4G17900.1 | Thale cress | nucleus | 90.18 | 88.99 |
| CDX78810 | Canola | nucleus | 89.29 | 88.11 |
| CDY44504 | Canola | nucleus | 87.95 | 86.78 |
| CDY69918 | Canola | nucleus | 71.43 | 70.8 |
| KRH39550 | Soybean | nucleus | 73.66 | 69.92 |
| CDY69910 | Canola | nucleus | 70.54 | 69.91 |
| CDY03199 | Canola | nucleus | 70.09 | 69.78 |
| KRH75604 | Soybean | nucleus | 65.18 | 69.52 |
| KRH74408 | Soybean | nucleus | 73.21 | 69.49 |
| CDY35177 | Canola | nucleus | 70.98 | 69.43 |
| PGSC0003DMT400045164 | Potato | nucleus | 66.07 | 65.2 |
| Solyc08g076860.2.1 | Tomato | nucleus | 65.18 | 64.04 |
| PGSC0003DMT400019836 | Potato | nucleus | 62.95 | 63.23 |
| Solyc06g061240.2.1 | Tomato | nucleus | 62.5 | 62.5 |
| PGSC0003DMT400046007 | Potato | cytosol | 62.5 | 62.5 |
| CDX87686 | Canola | nucleus | 64.29 | 62.34 |
| CDY66745 | Canola | nucleus | 61.61 | 61.88 |
| Solyc08g005100.2.1 | Tomato | cytosol | 61.16 | 61.16 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 70.09 | 59.92 |
| CDX87684 | Canola | nucleus | 61.61 | 58.72 |
| CDY72135 | Canola | cytosol, nucleus | 56.25 | 58.6 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 63.39 | 57.72 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 63.84 | 57.66 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 62.95 | 57.32 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 62.95 | 57.32 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 63.39 | 57.03 |
| KXG30975 | Sorghum | nucleus | 63.84 | 56.75 |
| Os04t0591100-01 | Rice | nucleus | 62.5 | 56.22 |
| EES12755 | Sorghum | nucleus | 62.95 | 56.18 |
| Os02t0692700-01 | Rice | nucleus | 64.29 | 56.03 |
| Zm00001d017682_P001 | Maize | nucleus | 62.05 | 55.16 |
| Zm00001d002489_P001 | Maize | nucleus | 62.5 | 54.69 |
| Zm00001d051511_P001 | Maize | nucleus | 61.16 | 54.58 |
| Zm00001d026047_P002 | Maize | nucleus | 61.61 | 54.55 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 68.75 | 54.23 |
| CDY44664 | Canola | plasma membrane | 68.75 | 52.38 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 63.39 | 51.64 |
| CDY01340 | Canola | cytosol | 50.89 | 48.93 |
| CDX88300 | Canola | nucleus | 51.34 | 48.52 |
| CDX87583 | Canola | nucleus | 51.34 | 48.32 |
| CDX68093 | Canola | nucleus | 51.34 | 48.12 |
| CDY00356 | Canola | cytosol | 51.79 | 47.54 |
| CDY33661 | Canola | cytosol | 50.89 | 46.91 |
| CDY29486 | Canola | cytosol | 50.89 | 46.72 |
| CDY04591 | Canola | cytosol | 50.89 | 46.72 |
| CDY30518 | Canola | cytosol | 38.84 | 45.55 |
| CDX71409 | Canola | nucleus | 37.5 | 44.68 |
| CDX85958 | Canola | nucleus | 49.55 | 44.4 |
| CDX96610 | Canola | cytosol | 51.34 | 43.56 |
| CDY04518 | Canola | nucleus | 36.61 | 43.39 |
| CDX98234 | Canola | cytosol | 28.12 | 36.63 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 52.23 | 36.45 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 58.04 | 35.71 |
| CDY06424 | Canola | cytosol | 33.04 | 32.46 |
| CDX81439 | Canola | cytosol | 35.71 | 31.25 |
| CDY27171 | Canola | nucleus | 33.04 | 30.83 |
| CDY12444 | Canola | nucleus | 33.04 | 30.83 |
| CDY37203 | Canola | cytosol | 34.82 | 30.59 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 31.25 | 30.43 |
| CDX89067 | Canola | cytosol | 33.48 | 30.24 |
| CDY36264 | Canola | nucleus | 25.89 | 30.21 |
| CDY48369 | Canola | cytosol | 33.04 | 29.72 |
| CDX71792 | Canola | cytosol | 31.25 | 28.81 |
| CDY43172 | Canola | nucleus | 25.45 | 28.36 |
| CDY09414 | Canola | cytosol | 27.68 | 28.18 |
| CDX93111 | Canola | cytosol | 34.38 | 27.8 |
| CDX89603 | Canola | cytosol | 34.38 | 27.8 |
| CDY17645 | Canola | nucleus | 28.57 | 27.47 |
| CDY02353 | Canola | mitochondrion, nucleus | 22.32 | 27.03 |
Protein Annotations
| EnsemblPlants:CDY08880 | EnsemblPlantsGene:GSBRNA2T00000871001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| ProteinID:CDY08880 | ProteinID:CDY08880.1 | UniParc:UPI0004EDC1D3 | UniProt:A0A078F2Y1 | MapMan:15.5.43 | : |
Description
BnaC08g11100DBnaC08g11100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2Y1]
Coordinates
chrLK031990:+:162858..164730
Molecular Weight (calculated)
25201.3 Da
IEP (calculated)
9.257
GRAVY (calculated)
-0.611
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDQENTI REIKPKNRRI MGAGGPEEED NRQPPWLKPL LQEKFFGHCK FHADSHKSEC NMYCLDCTNG PLCSLCLAHH KNHHTIQIRR SSYHDVIRVN
101: EIQKHIDIAG IQTYVINSAK VIFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGASRGFEK GRKNLVMESD DSSCSIGIGK NIQSFSPSTP
201: PLTASSHCRI AKRRKGIPHR SPMG
101: EIQKHIDIAG IQTYVINSAK VIFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGASRGFEK GRKNLVMESD DSSCSIGIGK NIQSFSPSTP
201: PLTASSHCRI AKRRKGIPHR SPMG
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
Arabidopsis Description
At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.