Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025003.1-P | Field mustard | nucleus | 97.79 | 97.79 |
| CDY69910 | Canola | nucleus | 96.02 | 96.02 |
| CDY03199 | Canola | nucleus | 82.3 | 82.67 |
| CDY35177 | Canola | nucleus | 83.19 | 82.1 |
| CDY01500 | Canola | nucleus | 71.24 | 75.23 |
| CDX90437 | Canola | nucleus | 70.8 | 74.77 |
| CDX78810 | Canola | nucleus | 73.89 | 73.57 |
| CDY44504 | Canola | nucleus | 73.45 | 73.13 |
| CDX76551 | Canola | nucleus | 70.8 | 71.43 |
| CDY08880 | Canola | nucleus | 70.8 | 71.43 |
| CDY66745 | Canola | nucleus | 65.49 | 66.37 |
| CDX87686 | Canola | nucleus | 67.7 | 66.23 |
| AT5G46710.1 | Thale cress | nucleus | 64.16 | 64.16 |
| CDX87684 | Canola | nucleus | 65.49 | 62.98 |
| CDY72135 | Canola | cytosol, nucleus | 59.73 | 62.79 |
| KRH39550 | Soybean | nucleus | 64.16 | 61.44 |
| KRH74408 | Soybean | nucleus | 64.16 | 61.44 |
| KRH75604 | Soybean | nucleus | 57.08 | 61.43 |
| PGSC0003DMT400045164 | Potato | nucleus | 58.41 | 58.15 |
| Solyc08g076860.2.1 | Tomato | nucleus | 58.41 | 57.89 |
| PGSC0003DMT400046007 | Potato | cytosol | 57.08 | 57.59 |
| PGSC0003DMT400019836 | Potato | nucleus | 55.75 | 56.5 |
| Solyc06g061240.2.1 | Tomato | nucleus | 55.75 | 56.25 |
| Solyc08g005100.2.1 | Tomato | cytosol | 54.42 | 54.91 |
| TraesCS6B01G291400.1 | Wheat | nucleus | 58.41 | 53.23 |
| TraesCS6D01G250500.1 | Wheat | nucleus | 57.96 | 52.61 |
| KXG30975 | Sorghum | nucleus | 58.41 | 52.38 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 60.62 | 52.29 |
| Os02t0692700-01 | Rice | nucleus | 59.29 | 52.14 |
| TraesCS2B01G469000.1 | Wheat | cytosol | 55.75 | 51.22 |
| TraesCS2D01G447400.1 | Wheat | cytosol | 55.75 | 51.22 |
| EES12755 | Sorghum | nucleus | 56.64 | 51.0 |
| TraesCS2A01G448300.1 | Wheat | cytosol | 55.31 | 50.81 |
| Os04t0591100-01 | Rice | nucleus | 55.75 | 50.6 |
| Zm00001d051511_P001 | Maize | nucleus | 56.19 | 50.6 |
| Zm00001d017682_P001 | Maize | nucleus | 55.75 | 50.0 |
| Zm00001d026047_P002 | Maize | nucleus | 55.31 | 49.41 |
| Zm00001d002489_P001 | Maize | nucleus | 55.75 | 49.22 |
| TraesCS6A01G264400.2 | Wheat | nucleus | 57.96 | 47.64 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 57.08 | 45.42 |
| CDY44664 | Canola | plasma membrane | 57.08 | 43.88 |
| CDX88300 | Canola | nucleus | 45.13 | 43.04 |
| CDX87583 | Canola | nucleus | 45.13 | 42.86 |
| CDX71409 | Canola | nucleus | 35.4 | 42.55 |
| CDY01340 | Canola | cytosol | 43.81 | 42.49 |
| CDX68093 | Canola | nucleus | 44.69 | 42.26 |
| CDY30518 | Canola | cytosol | 35.4 | 41.88 |
| CDY04518 | Canola | nucleus | 34.96 | 41.8 |
| CDY00356 | Canola | cytosol | 44.69 | 41.39 |
| CDY33661 | Canola | cytosol | 43.81 | 40.74 |
| CDY04591 | Canola | cytosol | 43.81 | 40.57 |
| CDY29486 | Canola | cytosol | 43.81 | 40.57 |
| CDX85958 | Canola | nucleus | 44.25 | 40.0 |
| CDX96610 | Canola | cytosol | 42.92 | 36.74 |
| HORVU6Hr1G067060.3 | Barley | nucleus, plastid | 50.44 | 35.51 |
| CDX98234 | Canola | cytosol | 26.99 | 35.47 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 51.77 | 32.14 |
| CDY36264 | Canola | nucleus | 26.99 | 31.77 |
| CDY06424 | Canola | cytosol | 31.42 | 31.14 |
| CDY27171 | Canola | nucleus | 32.74 | 30.83 |
| CDY12444 | Canola | nucleus | 32.3 | 30.42 |
| CDX81439 | Canola | cytosol | 34.07 | 30.08 |
| CDY37203 | Canola | cytosol | 33.19 | 29.41 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 29.65 | 29.13 |
| CDX89067 | Canola | cytosol | 31.86 | 29.03 |
| CDY48369 | Canola | cytosol | 31.86 | 28.92 |
| CDY17645 | Canola | nucleus | 29.65 | 28.76 |
| CDX71792 | Canola | cytosol | 30.09 | 27.98 |
| CDY09414 | Canola | cytosol | 26.99 | 27.73 |
| CDY43172 | Canola | nucleus | 24.34 | 27.36 |
| CDY02353 | Canola | mitochondrion, nucleus | 22.12 | 27.03 |
| CDX93111 | Canola | cytosol | 32.74 | 26.71 |
| CDX89603 | Canola | cytosol | 32.3 | 26.35 |
Protein Annotations
| EnsemblPlants:CDY69918 | EnsemblPlantsGene:GSBRNA2T00093630001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF8 | PFAM:PF04640 |
| ProteinID:CDY69918 | ProteinID:CDY69918.1 | SEG:seg | UniParc:UPI0004EF12F0 | UniProt:A0A078JQQ6 | MapMan:15.5.43 |
Description
BnaA06g40180DBnaA06g40180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQQ6]
Coordinates
chrLK040681:+:167..1677
Molecular Weight (calculated)
25770.9 Da
IEP (calculated)
9.039
GRAVY (calculated)
-0.643
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIEDYENPH RVIKPKNRRI MGADGLEEEE NHRWPQWLKP LLKEHFFVQC NVHSPKSECK MYCLDCTNGS LCSLCLAHHN NHRTIQIRRS SYHDVIRVNE
101: IQKYLDIFGI QTYVINSAKV VFLNERPQPR PGKGVTNTCK VCYRGLVDDC FSFCSLGCKV AGTTRSFEKR VKPTPMEPEN SSSNSSGVED NIPNAQSLAP
201: STPHLPTSTS LRKRKRKGIP FQSPLQ
101: IQKYLDIFGI QTYVINSAKV VFLNERPQPR PGKGVTNTCK VCYRGLVDDC FSFCSLGCKV AGTTRSFEKR VKPTPMEPEN SSSNSSGVED NIPNAQSLAP
201: STPHLPTSTS LRKRKRKGIP FQSPLQ
001: MAIEDYENPN REIKPKNRRF MEGENQWPIW LKPLLNQHFF AQCKFHGHLP RTECKMYCLD CTNDSFCSLC LSEHENHRTI QIRISSYHNV TKVDEIQKYL
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
101: DISSIQTYVI NSSKVLFLNE RPQSKPGKGF TNACMVCYRG LAENCFRFCS IGCKVAGTSG VFQKRVKHTT NDSDNSNNSS GVENNSSGAE NGNSNLQSLS
201: PPTPQFPPRS LRKRLRKGIP HRAPFS
Arabidopsis Description
At5g46710 [Source:UniProtKB/TrEMBL;Acc:Q9FIQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.