Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41149 | Canola | cytosol, extracellular, nucleus | 90.12 | 95.22 |
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 89.3 | 94.35 |
| CDY48369 | Canola | cytosol | 86.42 | 84.34 |
| CDX89067 | Canola | cytosol | 86.01 | 84.27 |
| AT3G60670.1 | Thale cress | cytosol | 81.07 | 80.41 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 36.21 | 64.71 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 56.38 | 54.8 |
| KRG88921 | Soybean | nucleus | 53.91 | 54.13 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 50.21 | 50.0 |
| GSMUA_Achr11P... | Banana | cytosol | 46.09 | 48.07 |
| KRH75326 | Soybean | extracellular, plasma membrane | 54.73 | 48.01 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 46.91 | 45.6 |
| CDX98234 | Canola | cytosol | 32.1 | 45.35 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 40.33 | 40.33 |
| CDY37203 | Canola | cytosol | 41.98 | 40.0 |
| CDX81439 | Canola | cytosol | 41.98 | 39.84 |
| CDY12444 | Canola | nucleus | 38.68 | 39.17 |
| CDY27171 | Canola | nucleus | 38.27 | 38.75 |
| CDX93111 | Canola | cytosol | 43.62 | 38.27 |
| CDX89603 | Canola | cytosol | 43.62 | 38.27 |
| CDY30518 | Canola | cytosol | 27.98 | 35.6 |
| CDY02353 | Canola | mitochondrion, nucleus | 26.75 | 35.14 |
| CDX90437 | Canola | nucleus | 30.04 | 34.11 |
| CDY01500 | Canola | nucleus | 30.04 | 34.11 |
| CDX71409 | Canola | nucleus | 26.34 | 34.04 |
| CDY04518 | Canola | nucleus | 26.34 | 33.86 |
| CDY43172 | Canola | nucleus | 27.57 | 33.33 |
| CDX78810 | Canola | nucleus | 30.04 | 32.16 |
| CDY44504 | Canola | nucleus | 30.04 | 32.16 |
| CDY66745 | Canola | nucleus | 29.22 | 31.84 |
| CDX76551 | Canola | nucleus | 29.22 | 31.7 |
| CDY72135 | Canola | cytosol, nucleus | 27.98 | 31.63 |
| CDY08880 | Canola | nucleus | 28.81 | 31.25 |
| CDY36264 | Canola | nucleus | 24.69 | 31.25 |
| CDX87686 | Canola | nucleus | 29.63 | 31.17 |
| CDY03199 | Canola | nucleus | 28.81 | 31.11 |
| CDY35177 | Canola | nucleus | 28.81 | 30.57 |
| CDY69910 | Canola | nucleus | 28.4 | 30.53 |
| CDY69918 | Canola | nucleus | 27.98 | 30.09 |
| CDY09414 | Canola | cytosol | 26.75 | 29.55 |
| CDY17645 | Canola | nucleus | 27.98 | 29.18 |
| CDX88300 | Canola | nucleus | 28.4 | 29.11 |
| CDX87583 | Canola | nucleus | 28.4 | 28.99 |
| CDX87684 | Canola | nucleus | 27.98 | 28.94 |
| CDX68093 | Canola | nucleus | 28.4 | 28.87 |
| CDY01340 | Canola | cytosol | 27.57 | 28.76 |
| CDY04591 | Canola | cytosol | 28.4 | 28.28 |
| CDY29486 | Canola | cytosol | 27.98 | 27.87 |
| CDY00356 | Canola | cytosol | 27.57 | 27.46 |
| CDY33661 | Canola | cytosol | 27.16 | 27.16 |
| CDX85958 | Canola | nucleus | 27.57 | 26.8 |
| CDX96610 | Canola | cytosol | 27.16 | 25.0 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 29.22 | 25.0 |
| CDY44664 | Canola | plasma membrane | 29.22 | 24.15 |
| CDY06424 | Canola | cytosol | 19.34 | 20.61 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 27.16 | 18.13 |
Protein Annotations
| EnsemblPlants:CDX71792 | EnsemblPlantsGene:GSBRNA2T00155508001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | PFAM:PF04640 |
| ProteinID:CDX71792 | ProteinID:CDX71792.1 | UniParc:UPI0004EE412F | MapMan:15.5.43 | : | : |
Description
BnaC08g30820D
Coordinates
chrLK031795:+:582793..584089
Molecular Weight (calculated)
27514.2 Da
IEP (calculated)
8.281
GRAVY (calculated)
-0.284
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPAPILQME TREFPAWLEV LLKEKFFNAC LDHEEEKKNE KNILCIDCCL SICPHCLPPH TSHRLLRIRR YMYNDVLRVE DGSKLMDCSL IQPYIVNSSK
101: VVFINERPHP RQFRGSGNFC STCDRSLQSP YLFCSLSCKI SDVIMRQRGL SGFLRVCNFL NLTEDVTTST LEPSGSDGDG GVDMFLCQAL ACTAATEIVR
201: KKRSSLTTTC RRVTTAVSST NTEAPANFFN RRKNTPPQRA PLY
101: VVFINERPHP RQFRGSGNFC STCDRSLQSP YLFCSLSCKI SDVIMRQRGL SGFLRVCNFL NLTEDVTTST LEPSGSDGDG GVDMFLCQAL ACTAATEIVR
201: KKRSSLTTTC RRVTTAVSST NTEAPANFFN RRKNTPPQRA PLY
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.