Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 97.06 | 54.1 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 78.68 | 42.8 |
| GSMUA_Achr11P... | Banana | cytosol | 70.59 | 41.2 |
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 64.71 | 38.26 |
| CDY41149 | Canola | cytosol, extracellular, nucleus | 64.71 | 38.26 |
| VIT_06s0061g00880.t01 | Wine grape | cytosol | 36.03 | 36.84 |
| Bra014478.1-P | Field mustard | cytosol | 66.91 | 36.69 |
| CDX89067 | Canola | cytosol | 66.91 | 36.69 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 65.44 | 36.63 |
| CDY48369 | Canola | cytosol | 66.91 | 36.55 |
| AT3G60670.1 | Thale cress | cytosol | 65.44 | 36.33 |
| CDX71792 | Canola | cytosol | 64.71 | 36.21 |
| VIT_11s0118g00600.t01 | Wine grape | nucleus | 63.97 | 35.51 |
| VIT_03s0063g02240.t01 | Wine grape | extracellular | 59.56 | 33.61 |
| VIT_01s0011g01410.t01 | Wine grape | nucleus | 61.76 | 32.18 |
| VIT_16s0039g01560.t01 | Wine grape | nucleus | 46.32 | 27.27 |
| VIT_01s0011g06060.t01 | Wine grape | nucleus | 47.06 | 26.02 |
| VIT_02s0012g01400.t01 | Wine grape | nucleus | 48.53 | 25.19 |
| VIT_08s0007g04560.t01 | Wine grape | cytosol | 35.29 | 20.87 |
| VIT_18s0122g00320.t01 | Wine grape | cytosol | 45.59 | 18.84 |
Protein Annotations
| MapMan:15.5.43 | ProteinID:CBI25785 | ProteinID:CBI25785.3 | UniProt:D7T5K2 | InterPro:DUF597 | EMBL:FN595530 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 |
| InterPro:IPR000315 | PFAM:PF04640 | PFscan:PS50119 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | TIGR:TC59144 |
| UniParc:UPI0001BE2CFD | ArrayExpress:VIT_00s0233g00100 | EnsemblPlantsGene:VIT_00s0233g00100 | EnsemblPlants:VIT_00s0233g00100.t01 | RefSeq:XP_003635131 | RefSeq:XP_003635131.1 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:16091054..16091930
Molecular Weight (calculated)
15791.4 Da
IEP (calculated)
7.975
GRAVY (calculated)
-0.060
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMVGFGCDI PHWLEILLGE KFFNACVVHE CAKKNEKNIF CLDCCTSICP HCLLPHRHHR LLQIRRYVYH DVIRLDDAQE LMDCSLVQSY TTNSAKVVFL
101: NQRPMSRPFR GSGNLCYTCE RSLQDPYLFC SLACKV
101: NQRPMSRPFR GSGNLCYTCE RSLQDPYLFC SLACKV
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.