Factsheet for VIT_16s0039g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24008	Soybean	cytosol	74.03	76.68
KRH27687	Soybean	cytosol	77.06	76.39
KRH29309	Soybean	cytoskeleton, cytosol, nucleus	72.73	75.34
KRH77790	Soybean	nucleus	77.06	70.92
VIT_02s0012g01400.t01	Wine grape	nucleus	74.89	66.03
Os02t0692700-01	Rice	nucleus	69.26	62.26
Os04t0591100-01	Rice	nucleus	66.67	61.85
TraesCS6B01G291400.1	Wheat	nucleus	65.8	61.29
EES12755	Sorghum	nucleus	66.23	60.96
TraesCS6D01G250500.1	Wheat	nucleus	65.37	60.64
TraesCS2A01G448300.1	Wheat	cytosol	64.5	60.57
TraesCS2D01G447400.1	Wheat	cytosol	64.5	60.57
TraesCS2B01G469000.1	Wheat	cytosol	64.07	60.16
KXG30975	Sorghum	nucleus	65.37	59.92
Zm00001d017682_P001	Maize	nucleus	64.5	59.13
Zm00001d002489_P001	Maize	nucleus	65.37	58.98
Zm00001d026047_P002	Maize	nucleus	64.5	58.89
Zm00001d051511_P001	Maize	nucleus	62.77	57.77
TraesCS6A01G264400.2	Wheat	nucleus	65.37	54.91
VIT_00s0233g00100.t01	Wine grape	cytosol	27.27	46.32
VIT_06s0061g00880.t01	Wine grape	cytosol	25.54	44.36
HORVU6Hr1G067060.3	Barley	nucleus, plastid	57.14	41.12
VIT_08s0007g04560.t01	Wine grape	cytosol	39.39	39.57
VIT_18s0122g00320.t01	Wine grape	cytosol	47.19	33.13
VIT_15s0048g00580.t01	Wine grape	nucleus	35.06	32.4
VIT_02s0154g00150.t01	Wine grape	nucleus	33.77	31.97
VIT_11s0118g00600.t01	Wine grape	nucleus	32.47	30.61
VIT_03s0063g02240.t01	Wine grape	extracellular	31.6	30.29
VIT_01s0011g01410.t01	Wine grape	nucleus	31.6	27.97
VIT_01s0011g06060.t01	Wine grape	nucleus	28.57	26.83

Protein Annotations

ArrayExpress:VIT_16s0039g01560	EMBL:FN595750	EnsemblPlants:VIT_16s0039g01560.t01	EnsemblPlantsGene:VIT_16s0039g01560	EntrezGene:100261275	EntrezGene:LOC100261275
InterPro:DUF597	PANTHER:PTHR31065	PANTHER:PTHR31065:SF8	PFAM:PF04640	ProteinID:CCB50582	ProteinID:CCB50582.1
RefSeq:XP_002271206	RefSeq:XP_002271206.1	SEG:seg	TIGR:TC53522	unigene:Vvi.8183	UniParc:UPI0001984D00
UniProt:F6HED6	wikigene:100261275	wikigene:LOC100261275	MapMan:15.5.43	:	:

Description

No Description!

Coordinates

chr16:+:1157688..1159330

Molecular Weight (calculated)

25688.9 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.446

Length

231 amino acids

Sequence
(BLAST)

001: MKPKNRRIMG AGGPVEEEGE EEVESKWPPW LRPLLQTSFF VQCKLHADSH RSECNMYCLD CMNGALCSLC LNFHKDHRAI QIRRSSYHDV IRVSEIQKFL
101: DITGVQTYII NSARIVFLNE RPQPRPGKGV TNTCQVCERS LLDSFTFCSL GCKIVGTSKS FRKKKLCMET EGSDSESLNG ASSGSGSSSK SKIPSFTPST
201: PPPTAAATYR TAKRRKGVPH RAPLGALIIQ Y

Best Arabidopsis Sequence Match ( AT4G17900.1 )
(BLAST)

001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG

Arabidopsis Description

At4g17900 [Source:UniProtKB/TrEMBL;Acc:Q0WUB8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.