Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007550.1-P | Field mustard | extracellular, nucleus, vacuole | 99.13 | 99.13 |
| CDX71792 | Canola | cytosol | 95.22 | 90.12 |
| CDX89067 | Canola | cytosol | 88.26 | 81.85 |
| CDY48369 | Canola | cytosol | 88.26 | 81.53 |
| AT3G60670.1 | Thale cress | cytosol | 82.17 | 77.14 |
| VIT_00s0233g00100.t01 | Wine grape | cytosol | 38.26 | 64.71 |
| VIT_15s0048g00580.t01 | Wine grape | nucleus | 56.52 | 52.0 |
| KRG88921 | Soybean | nucleus | 53.91 | 51.24 |
| VIT_02s0154g00150.t01 | Wine grape | nucleus | 52.17 | 49.18 |
| GSMUA_Achr11P... | Banana | cytosol | 48.26 | 47.64 |
| CDX98234 | Canola | cytosol | 34.78 | 46.51 |
| KRH75326 | Soybean | extracellular, plasma membrane | 54.78 | 45.49 |
| Solyc01g091000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.26 | 44.4 |
| CDX81439 | Canola | cytosol | 44.35 | 39.84 |
| CDY37203 | Canola | cytosol | 43.91 | 39.61 |
| CDY12444 | Canola | nucleus | 40.43 | 38.75 |
| KRH28037 | Soybean | cytosol, nucleus, plastid | 40.87 | 38.68 |
| CDX89603 | Canola | cytosol | 46.52 | 38.63 |
| CDX93111 | Canola | cytosol | 46.52 | 38.63 |
| CDY27171 | Canola | nucleus | 40.0 | 38.33 |
| CDY30518 | Canola | cytosol | 28.7 | 34.55 |
| CDX90437 | Canola | nucleus | 31.74 | 34.11 |
| CDY01500 | Canola | nucleus | 31.74 | 34.11 |
| CDY02353 | Canola | mitochondrion, nucleus | 27.39 | 34.05 |
| CDX71409 | Canola | nucleus | 26.96 | 32.98 |
| CDY04518 | Canola | nucleus | 26.96 | 32.8 |
| CDY43172 | Canola | nucleus | 28.26 | 32.34 |
| CDX78810 | Canola | nucleus | 31.74 | 32.16 |
| CDY44504 | Canola | nucleus | 31.74 | 32.16 |
| CDY66745 | Canola | nucleus | 30.87 | 31.84 |
| CDX76551 | Canola | nucleus | 30.87 | 31.7 |
| CDY08880 | Canola | nucleus | 30.43 | 31.25 |
| CDX87686 | Canola | nucleus | 31.3 | 31.17 |
| CDY72135 | Canola | cytosol, nucleus | 29.13 | 31.16 |
| CDY36264 | Canola | nucleus | 25.65 | 30.73 |
| CDY03199 | Canola | nucleus | 30.0 | 30.67 |
| CDY35177 | Canola | nucleus | 30.43 | 30.57 |
| CDY69910 | Canola | nucleus | 29.57 | 30.09 |
| CDY69918 | Canola | nucleus | 29.13 | 29.65 |
| CDY09414 | Canola | cytosol | 27.83 | 29.09 |
| CDX87684 | Canola | nucleus | 29.57 | 28.94 |
| CDY17645 | Canola | nucleus | 29.13 | 28.76 |
| CDX88300 | Canola | nucleus | 29.13 | 28.27 |
| CDX87583 | Canola | nucleus | 29.13 | 28.15 |
| CDX68093 | Canola | nucleus | 29.13 | 28.03 |
| CDY01340 | Canola | cytosol | 28.26 | 27.9 |
| CDY04591 | Canola | cytosol | 29.13 | 27.46 |
| CDY29486 | Canola | cytosol | 28.7 | 27.05 |
| CDY00356 | Canola | cytosol | 28.26 | 26.64 |
| CDY33661 | Canola | cytosol | 27.83 | 26.34 |
| CDX85958 | Canola | nucleus | 28.26 | 26.0 |
| CDX84082 | Canola | cytosol, endoplasmic reticulum, vacuole | 30.87 | 25.0 |
| CDX96610 | Canola | cytosol | 27.83 | 24.24 |
| CDY44664 | Canola | plasma membrane | 30.87 | 24.15 |
| CDY06424 | Canola | cytosol | 20.0 | 20.18 |
| CDY01253 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 28.7 | 18.13 |
Protein Annotations
| EnsemblPlants:CDY41149 | EnsemblPlantsGene:GSBRNA2T00072546001 | InterPro:DUF597 | PANTHER:PTHR31065 | PANTHER:PTHR31065:SF1 | PFAM:PF04640 |
| ProteinID:CDY41149 | ProteinID:CDY41149.1 | UniParc:UPI0004EDB726 | UniProt:A0A078HUX4 | MapMan:15.5.43 | : |
Description
BnaA09g38660DBnaA09g38660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUX4]
Coordinates
chrLK032492:+:53686..54913
Molecular Weight (calculated)
26185.8 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.227
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLAPILQME TREFPAWLEV LLKEKFFNAC LDHEEEKKNE KNILCIDCCL SICPHCLPSH TSHRLLRIRR YMYNDVLRVE DGSKLMDCSL IQPYIVNSSK
101: VVFINERPHS RQFRGSGNFC NTCDRSLQSP YLFCSLSCKI SDVIMRQRGL SGFLRVCISL NLTDDEGGVD MFLCQALACT AATEIVRKKR SSLSSTCRRV
201: TTAVSSANTE APANFFNRRK NTPPQRAPLY
101: VVFINERPHS RQFRGSGNFC NTCDRSLQSP YLFCSLSCKI SDVIMRQRGL SGFLRVCISL NLTDDEGGVD MFLCQALACT AATEIVRKKR SSLSSTCRRV
201: TTAVSSANTE APANFFNRRK NTPPQRAPLY
001: MESGEFPAWL EVLLKDKFFN ACLDHEDDKK NEKNILCIDC CLTICPHCLS SHTSHRLLQI RRYVYRDVLR VEDGSKLMDC SLIQPYTTNS SKVVFINERP
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
101: QSRQFRGSGN ICITCDRSLQ SPYLFCCLSC KISDVIMRQR GLSGFLRVCN VLDLTDEVTT TTPSSTLEPT GSNRTSSESS GNEGEDMFWC QALACTATTE
201: IVRKKRSSLS TTCRRVTEVV STTNTEAPVN FLNRRKNPPQ RAPLY
Arabidopsis Description
At3g60670 [Source:UniProtKB/TrEMBL;Acc:Q9LZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.