Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0063g00610.t01 | Wine grape | peroxisome | 54.55 | 11.36 |
| VIT_05s0094g01250.t01 | Wine grape | cytosol | 12.88 | 6.09 |
| VIT_00s0220g00130.t01 | Wine grape | cytosol | 14.39 | 5.49 |
| VIT_05s0094g01230.t01 | Wine grape | cytosol | 11.36 | 5.43 |
| VIT_05s0094g01130.t01 | Wine grape | cytosol | 13.64 | 5.26 |
| VIT_05s0094g01150.t01 | Wine grape | cytosol | 13.64 | 5.23 |
| VIT_05s0094g01140.t01 | Wine grape | cytosol | 12.88 | 4.97 |
| VIT_05s0094g01160.t01 | Wine grape | cytosol | 12.88 | 4.93 |
| VIT_11s0016g05230.t01 | Wine grape | cytosol | 12.88 | 4.91 |
| VIT_05s0094g01120.t01 | Wine grape | cytosol | 12.12 | 4.64 |
| VIT_11s0052g00420.t01 | Wine grape | cytosol | 11.36 | 4.4 |
| VIT_05s0094g01260.t01 | Wine grape | cytosol | 11.36 | 4.39 |
| VIT_11s0052g00410.t01 | Wine grape | cytosol | 11.36 | 4.32 |
| VIT_12s0059g00690.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 11.36 | 4.16 |
| VIT_12s0059g00670.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 10.61 | 3.88 |
Protein Annotations
| ArrayExpress:VIT_04s0043g00180 | EMBL:FN595763 | EnsemblPlants:VIT_04s0043g00180.t01 | EnsemblPlantsGene:VIT_04s0043g00180 | Gene3D:3.40.50.720 | Gene3D:3.90.180.10 |
| InterPro:GroES-like_sf | PANTHER:PTHR43677 | PANTHER:PTHR43677:SF3 | ProteinID:CCB51845 | ProteinID:CCB51845.1 | SEG:seg |
| SUPFAM:SSF50129 | UniParc:UPI0002108DB7 | UniProt:F6HHZ8 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4:+:13097658..13098394
Molecular Weight (calculated)
14284.4 Da
IEP (calculated)
4.507
GRAVY (calculated)
0.231
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVGIISVLG DSVNNLKIGT PTAVATFGSY AEFLMVPSKH ILPVARPDPE IVATLTLGLT ASITLEKVAQ MESGMSLLLW EELDDLQSSL QNQLEIESLQ
101: LVKVRNKLCS CNGKKWVVGF DCEGVDLCHH DT
101: LVKVRNKLCS CNGKKWVVGF DCEGVDLCHH DT
001: MASSSPTQLA HVPIPPEPGG RSPTQEANEP PVPIYIVTDP FQLPADFLNP SPEKKLVIGF DCEGVDLCRH GKLCIMQIAF SNAIYLVDVI EGGEVIMKAC
101: KPALESNYIT KVIHDCKRDS EALYFQFGIR LHNVVDTQIA YSLIEEQEGR RRPLDDYISF VSLLADPRYC GISYEEKEEV RVLMRQDPKF WTYRPMTELM
201: IRAAADDVRF LLYLYHKMMG KLNQRSLWHL AVRGALYCRC LCCMNDADFA DWPTVPPIPD NLKSEDQCLE EEILSVLDVP PGKMGRVIGR KGASILAIKE
301: ACNAEILIGG AKGPPDKIFV IGPVREVRKA EAILRGRMID Y
101: KPALESNYIT KVIHDCKRDS EALYFQFGIR LHNVVDTQIA YSLIEEQEGR RRPLDDYISF VSLLADPRYC GISYEEKEEV RVLMRQDPKF WTYRPMTELM
201: IRAAADDVRF LLYLYHKMMG KLNQRSLWHL AVRGALYCRC LCCMNDADFA DWPTVPPIPD NLKSEDQCLE EEILSVLDVP PGKMGRVIGR KGASILAIKE
301: ACNAEILIGG AKGPPDKIFV IGPVREVRKA EAILRGRMID Y
Arabidopsis Description
3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4ITJ6]
SUBAcon: [mitochondrion,peroxisome,plastid,cytosol]
SUBAcon: [mitochondrion,peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.