Factsheet for VIT_12s0059g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g00690.t01	Wine grape	cytoskeleton, cytosol, peroxisome	81.44	81.44
KRH26780	Soybean	cytosol	68.7	70.86
KRH26779	Soybean	cytosol	66.48	66.3
KRH22573	Soybean	cytoskeleton, cytosol, peroxisome	65.37	64.84
Solyc07g045090.2.1	Tomato	cytoskeleton, cytosol, peroxisome	61.5	64.53
Solyc07g045080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	53.46	64.12
VIT_05s0094g01120.t01	Wine grape	cytosol	41.0	42.9
VIT_05s0094g01130.t01	Wine grape	cytosol	40.44	42.69
VIT_05s0094g01150.t01	Wine grape	cytosol	39.89	41.86
VIT_05s0094g01140.t01	Wine grape	cytosol	38.5	40.64
VIT_05s0094g01160.t01	Wine grape	cytosol	38.5	40.29
VIT_05s0094g01260.t01	Wine grape	cytosol	37.95	40.06
VIT_00s0220g00130.t01	Wine grape	cytosol	36.84	38.44
VIT_05s0094g01230.t01	Wine grape	cytosol	28.81	37.68
VIT_05s0094g01250.t01	Wine grape	cytosol	28.81	37.28
VIT_11s0052g00420.t01	Wine grape	cytosol	34.9	36.95
VIT_11s0052g00410.t01	Wine grape	cytosol	35.18	36.6
VIT_11s0016g05230.t01	Wine grape	cytosol	33.24	34.68
VIT_03s0063g00610.t01	Wine grape	peroxisome	22.99	13.09
VIT_04s0043g00180.t01	Wine grape	cytosol, extracellular, nucleus	3.88	10.61

Protein Annotations

EntrezGene:100253369	wikigene:100253369	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.3	InterPro:ADH_C
EMBL:AM424395	ProteinID:CAN60126	ProteinID:CAN60126.1	ProteinID:CBI28803	ProteinID:CBI28803.3	UniProt:D7TE80
EMBL:FN595765	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:GroES-like_sf	EntrezGene:LOC100253369	wikigene:LOC100253369	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF16884	InterPro:PKS_ER	PANTHER:PTHR43205	PANTHER:PTHR43205:SF6	SMART:SM00829	SUPFAM:SSF50129
SUPFAM:SSF51735	TIGR:TC62614	UniParc:UPI00015CA9FD	ArrayExpress:VIT_12s0059g00670	EnsemblPlantsGene:VIT_12s0059g00670	EnsemblPlants:VIT_12s0059g00670.t01
unigene:Vvi.15252	unigene:Vvi.19513	RefSeq:XP_002268886	RefSeq:XP_002268886.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:5504434..5508516

Molecular Weight (calculated)

39523.5 Da

IEP (calculated)

5.462

GRAVY (calculated)

-0.023

Length

361 amino acids

Sequence
(BLAST)

001: MTGLEGVGGC GGENSTVVES REWVMSAYAA EGVPTSDHLK LRTTKLSLDA NSIPDGHVAV ELLWISVDPY LRTRMTGHDD GLYFSQFALN EVITAFGVGR
101: VFLSKNGKFS TGDIVINPFF PFAEYCIAPP TFLRVIDPTA GIELPAYLSS LGVPGFAAWV GIEVLGNPKP GSNVFISAAA GGVGIFAGQL AKLKGCRVVG
201: STGTDEKVKL LKEEFGYDEA FNYNKETDFD AALRKYFPNG IDLYLDNVGG KMLEAVLNHV NLHARIPICG MISQYNQIWT EREGVRNLLN MVGKEVRMEG
301: YLVGSYLDRF DDFTKEMETY TKEGKLRSKH KIYCGIESFI ESLGSMFTSS NIGKVVIQVK P

Best Arabidopsis Sequence Match ( AT1G65560.1 )
(BLAST)

001: MGEVSVVENK KVILKNYVDG IPTETDMEVK LGETIELKAP KGSSCFLVKN LYLSCDPYMR GRMRDFHGSY LPPFVPGQRI EGFGLARVID SDDTNYKPGD
101: IVSGIIGWEE YSLLRSSDNL QLRNIQLDDD IPLSYHLGLL GMAGFTAYAG FNEICCPKKG DSVFVSAACG AVGQLVGQLA KLHGCYVVGS AGSKQKVEIL
201: KNELGYDEAF NYKEEADLDT ALKRYFPEGI DIYFDNVGGS MLDAALLNMK VRGRIALCGM VSLQSLSTSS QGIKNLYSAI YKRLRLEGFL QSDYLHIFPQ
301: FLENVKRYYK EGKIVYVEDI SEGLDLAPAA LVGLFSGKNI GKQVVRVAKE

Arabidopsis Description

Zinc-binding dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.