Factsheet for VIT_12s0055g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0055g00600.t01	Wine grape	mitochondrion, plasma membrane, plastid	37.59	91.38
Os04t0616600-01	Rice	plasma membrane	60.28	31.84
VIT_10s0092g00520.t01	Wine grape	plasma membrane	66.67	28.31
GSMUA_AchrUn_...	Banana	cytosol	68.09	23.53
VIT_19s0014g00480.t01	Wine grape	cytosol	38.3	21.95
VIT_19s0027g00390.t01	Wine grape	cytosol	53.19	19.48
VIT_06s0004g06430.t01	Wine grape	cytosol	47.52	18.01
VIT_08s0007g02150.t01	Wine grape	cytosol	46.81	17.37
VIT_19s0014g01530.t01	Wine grape	mitochondrion	46.1	16.88
VIT_08s0040g01930.t01	Wine grape	cytosol, plastid	44.68	15.79
VIT_00s0370g00010.t01	Wine grape	cytosol	48.23	15.42
VIT_11s0052g00700.t01	Wine grape	plasma membrane	42.55	13.22
VIT_13s0019g04160.t01	Wine grape	cytosol	26.95	13.19
VIT_10s0092g00570.t01	Wine grape	mitochondrion, plasma membrane	72.34	10.93
VIT_19s0014g00510.t01	Wine grape	plasma membrane	23.4	8.35
VIT_12s0055g00610.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	ProteinID:CCB46145	ProteinID:CCB46145.1	UniProt:F6H1S6	EMBL:FN595228
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PANTHER:PTHR27006	PANTHER:PTHR27006:SF95	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI00021083B7
ArrayExpress:VIT_12s0055g00640	EnsemblPlantsGene:VIT_12s0055g00640	EnsemblPlants:VIT_12s0055g00640.t01	:	:	:

Description

No Description!

Coordinates

chr12:-:13782390..13787312

Molecular Weight (calculated)

15737.8 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.101

Length

141 amino acids

Sequence
(BLAST)

001: MTHISTRVAG TIGYLASEYA MRGHLTEKAD VFSFGVVALE IVSGRPNSDT SLEEEKAYLL EWTWQLHENN CEIQLVDSRL SEFSEEASRM IGVALLCTQA
101: SPTLQPPMSR VVAMLSGDIA VSRVPTKPVY LTDWKFNDRN L

Best Arabidopsis Sequence Match ( AT1G56120.3 )
(BLAST)

001: MQWMTFGINA LSGPIPKEIG LLTDLRLLGI SSNNFSGSLP AEIGSCTKLQ QMYIDSSGLS GGIPLSFANF VELEVAWIMD VELTGRIPDF IGFWTKLTTL
101: RILGTGLSGP IPSSFSNLIA LTELRLGDIS NGSSSLDFIK DMKSLSVLVL RNNNLTGTIP STIGGYTSLQ QVDLSFNKLH GPIPASLFNL SRLTHLFLGN
201: NTLNGSLPTL KGQSLSNLDV SYNDLSGSLP SWVSLPDLKL NLVANNFTLE GLDNRVLSGL HCLQKNFPCN RGEGIYYNFS INCGGPEIRS VSGALFEKED
301: ADLGPASFVV SAAKRWAASS VGNFAGSSNN IYIATSLAQF INTMDSELFQ SARLSASSLR YYGLGLENGG YTVTLQFAEV QIEGSNSWKG IGRRRFNIYV
401: QGRLVEKDFD IRRTAGGSSV RAVQREYKTN VSENHLEVHL FWAGKGTCCI PIQGAYGPLI AAVSATPDFT PTVANRPPSK GKSRTGTIVG VIVGVGLLSI
501: FAGVVILVIR KRRKPYTDDE EILSMDVKPY TFTYSELKNA TQDFDLSNKL GEGGFGAVYK GNLNDGREVA VKQLSIGSRQ GKGQFVAEII AISSVLHRNL
601: VKLYGCCFEG DHRLLVYEYL PNGSLDQALF GDKSLHLDWS TRYEICLGVA RGLVYLHEEA SVRIIHRDVK ASNILLDSEL VPKVSDFGLA KLYDDKKTHI
701: STRVAGTIGY LAPEYAMRGH LTEKTDVYAF GVVALELVSG RKNSDENLEE GKKYLLEWAW NLHEKNRDVE LIDDELSEYN MEEVKRMIGI ALLCTQSSYA
801: LRPPMSRVVA MLSGDAEVND ATSKPGYLTD CTFDDTTSSS FSNFQTKDTS FSTSFIAPGP EMPLRDGESK PMVGFKIKEG R

Arabidopsis Description

Leucine-rich repeat transmembrane protein kinase [Source:UniProtKB/TrEMBL;Acc:F4I3K0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.