Factsheet for Zm00001d011301_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01041	Sorghum	plastid	92.55	91.83
Os06t0367100-01	Rice	plastid	79.64	79.29
GSMUA_Achr6P13530_001	Banana	plastid	66.07	65.42
VIT_19s0090g00920.t01	Wine grape	plastid	63.29	63.5
CDY29828	Canola	plastid	60.51	60.71
AT3G20440.2	Thale cress	plastid	60.07	60.07
Bra035782.1-P	Field mustard	plastid	59.84	60.04
CDY54647	Canola	plastid	59.84	60.04
Solyc07g064830.2.1	Tomato	nucleus	59.62	59.36
PGSC0003DMT400057446	Potato	cytosol	15.57	54.26
Zm00001d036363_P001	Maize	plastid	11.68	37.63
Zm00001d014844_P005	Maize	plastid	27.81	30.38
Zm00001d016684_P005	Maize	plastid	26.36	29.51
Zm00001d003817_P002	Maize	plastid	28.03	23.2
Zm00001d033399_P001	Maize	endoplasmic reticulum, vacuole	0.89	6.84

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
ProteinID:AQK96460.1	InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:K7VJE7	PFAM:PF00128	PFAM:PF02806
PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF4	SMART:SM00642	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI000220B3E9	EnsemblPlantsGene:Zm00001d011301	EnsemblPlants:Zm00001d011301_P001	EnsemblPlants:Zm00001d011301_T001
SEG:seg	:	:	:	:	:

Description

Starch branching enzyme III

Coordinates

chr8:+:146174056..146176755

Molecular Weight (calculated)

103443.0 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.505

Length

899 amino acids

Sequence
(BLAST)

001: MASCPLFLLV PRPPPSLVGA DRCPGSAGCS DLPTSCRPHP GRRHGYPFRC NSSSSSSAPR ERPPRQRPGG RGDAIDPVGF LTKLGVSDRA FAQFLRDRHK
101: ALKDRRWELC SRFIDLKEAS SGFELLGMHR HRQHRIDFME WAPGARYCSL IGDFNQWSPT ENCAREGHLG HDDFGYWFII LEDKLREGQE QDEYFFQEYN
201: YVDDYDKGDN GIDADEIMRR MKEEYWEPGE IRSRQSQLEM VVKLYEQMFG PNGPQTEEEL GEIPDAQTRY NEFKASQKAD SSSQPSYDII DNGQEFDIFS
301: VVTDRASFEK FQAKKPPLAY WVEMRKGRIA WLEKYVPTIS HKDKYRVYFN TPDGALERIP AWAAYVLPDA EGKQSYAVHW EPPPEEIYKW RFGRPKVKGS
401: LRIYECHVGI SGSEQKVSSF QEFTSKVLPH IKKAGYNAVQ LIGVVEHKDY SSIGYKVTNY FAVSSRFGTP DDFKKLVDEA HGLGLVVLLD IIHSYASADE
501: LVGLSLFDGS NDCYFHSGKR GHHKYWGTRM FKYDDVDVLH FLLSNLNWWV TEYRIDGFQF HSLSSMLYTH NGFSTFTGAM EEYCNQYVDK DALIYLILAN
601: EMLHRLHPDI VTIAEDATFY PGLCEPITQG GLGFNYWVNL SIPEMWLWHL ENVPEQEWSM NKIIKVLVSS NQNMLSYVEN HNQSISGRKS FAEIILNSRE
701: CSVGSVDDNL IRASSLLKLM KLITFTTSGG AYLNFMGNEF AHPEKVEFPM PSNDYSFELA NRQWELLDKV FHKHIFNFDK DVMSLDENER IISRGPPNIL
801: HCDDTSMVIS FTRGPLFFIF NFNPQVSHQS YRVGVDEAGE YQLIFNTDET KYGGCETLKS SQYMRRTSDK RADGCRNSLE LALPSRSAQI YKLVRILRI

Best Arabidopsis Sequence Match ( AT3G20440.2 )
(BLAST)

001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI

Arabidopsis Description

SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.