Factsheet for VIT_19s0090g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057446	Potato	cytosol	21.43	74.42
Solyc07g064830.2.1	Tomato	nucleus	72.99	72.43
AT3G20440.2	Thale cress	plastid	72.43	72.19
Bra035782.1-P	Field mustard	plastid	71.54	71.54
CDY29828	Canola	plastid	71.43	71.43
CDY54647	Canola	plastid	71.32	71.32
KRG98710	Soybean	plastid	71.32	71.08
GSMUA_Achr6P13530_001	Banana	plastid	67.52	66.63
EES01041	Sorghum	plastid	64.29	63.58
Zm00001d011301_P001	Maize	plastid	63.5	63.29
Os06t0367100-01	Rice	plastid	63.73	63.23
TraesCS7A01G336400.1	Wheat	plastid	63.5	62.25
TraesCS7D01G344000.1	Wheat	plastid	63.5	62.25
TraesCS7B01G248000.1	Wheat	plastid	63.39	62.14
HORVU7Hr1G082830.1	Barley	plastid	49.55	61.41
HORVU7Hr1G082850.6	Barley	cytosol, plastid	13.06	47.76
VIT_18s0001g00060.t01	Wine grape	plastid	28.46	30.36
VIT_08s0007g03750.t01	Wine grape	plastid	28.35	29.57
Zm00001d033399_P001	Maize	endoplasmic reticulum, vacuole	0.78	5.98

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100260732	wikigene:100260732	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5
Gene3D:3.20.20.80	InterPro:A-amylase/branching_C	InterPro:Branching_enzy	ProteinID:CBI26672	ProteinID:CBI26672.3	UniProt:D7T813
EMBL:FN595751	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100260732	wikigene:LOC100260732	PFAM:PF00128	PFAM:PF02806
PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF4	SMART:SM00642	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0001BE2C24	ArrayExpress:VIT_19s0090g00920	EnsemblPlantsGene:VIT_19s0090g00920	EnsemblPlants:VIT_19s0090g00920.t01
RefSeq:XP_003634715	RefSeq:XP_003634715.1	RefSeq:XP_003634716	RefSeq:XP_003634716.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:6966540..7002635

Molecular Weight (calculated)

103486.0 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.595

Length

896 amino acids

Sequence
(BLAST)

001: MTSLSLPTQF SCHPNASSLP FSSQNRARNR VPFPKKKWRN RWRCSAAEQP QQHRTKKKKP QAEADKGIDP VGFLTKLGIS HKQLSQFLRE RHKALKDLKD
101: EIFNRHLNLQ EMASGYEILG MHRNVQHRVD FMEWAPGARY CALVGDFNGW SPTENCAREG HFGRDDYGYW FIILEDKLRE GEKPDELYFQ QYNYVDDNDK
201: GDSGVTIEEL FKKANDEYWE PGEDRFIKSR YEVAAKLYEQ IFGPNGPETE EELEEIPDAE TRYKAWKEQH KDDPPSNLPP FDVIDNGKEY DIYNVVDDPV
301: WREKFRAKKP PLAYWLESRK GRKAWLKKYI PGIPHGSKYR VYFNTPDGPL ERIPAWATYV LPDVDGKQAF AIHWEPPPES AHRWKNMRPN VPKSLRIYEC
401: HVGISGSEQK ISSFNEFTEN VLPHIKEAGY NAIQLIGVVE HKDYSSVGYK VTNLYATSSR YGTPDDFKRL VDEAHGQGML VFLDIVHSYS AADEMVGLSL
501: FDGSNDCYFH TGKRGHHKYW GTRMFKYGDP DVLHFLLSNL NWWVVEYQID GFQFHSLSSM IYTHNGFASF TGDLEEYCNQ YVDKDALMYL ILANEILHAL
601: HPKIVTIAED ATYYPGLCEP TSQGGLGFDY YVNLSAPDMW LDFLENIPDH EWSMSKIVST LIGNRQYADK MLVYAENHNQ SISGGRSFAE ILFGAIKEDP
701: LSSKTTLLRG CSLHKMIRLI TLTIGGHAYL NFMGNEFGHP KRIEFPMPSN NFSLSLANRC WDLLENEVHH NLFSFDKDMM KLGENERSLS RGLPNIHHVK
801: DSAMVISYMR GPLLFIFNFH PTNSYEGYYV GVEEAGEYQI ILNTDETKYG GQGLIEEGQY LRRTINRRVD GLRNCLEVSL PSRTAQVYKL SRILRI

Best Arabidopsis Sequence Match ( AT3G20440.2 )
(BLAST)

001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI

Arabidopsis Description

SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.