CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011301_P001	Maize	plastid	91.83	92.55
TraesCS7D01G344000.1	Wheat	plastid	83.55	82.82
TraesCS7B01G248000.1	Wheat	plastid	83.44	82.71
TraesCS7A01G336400.1	Wheat	plastid	83.33	82.6
Os06t0367100-01	Rice	plastid	80.68	80.95
HORVU7Hr1G082830.1	Barley	plastid	62.58	78.42
HORVU7Hr1G082850.6	Barley	cytosol, plastid	18.65	68.98
GSMUA_Achr6P13530_001	Banana	plastid	66.23	66.08
VIT_19s0090g00920.t01	Wine grape	plastid	63.58	64.29
CDY29828	Canola	plastid	61.59	62.28
AT3G20440.2	Thale cress	plastid	61.26	61.74
Bra035782.1-P	Field mustard	plastid	60.93	61.61
CDY54647	Canola	plastid	60.93	61.61
Solyc07g064830.2.1	Tomato	nucleus	59.6	59.8
PGSC0003DMT400057446	Potato	cytosol	16.11	56.59
OQU77158	Sorghum	plastid	28.26	30.77
OQU81503	Sorghum	plastid	27.7	30.35
EES06902	Sorghum	plastid	26.71	30.14
KRH56220	Soybean	cytosol	1.43	17.11

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	UniProt:C5XQC4	EnsemblPlants:EES01041	ProteinID:EES01041	ProteinID:EES01041.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009791
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF4
MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642	EnsemblPlantsGene:SORBI_3003G213800	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF81296	unigene:Sbi.20680	UniParc:UPI0001A84A0A	RefSeq:XP_002455921.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:54790314..54793810

Molecular Weight (calculated)

104133.0 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.524

Length

906 amino acids

Sequence
(BLAST)

001: MTSCPLFLLV PRPPPPLVGA DGCPTSAGRA HLPPSCRPHP GRRHGYPFRC DSSSSSPAPR ERPPRSRQQR QQRPGGRGDA VDPVGFLAKL GVSDRAFAQF
101: LRDRHKALKD RRWEVCSRFI DLKEASSGFE LLGMHRHRQH RIDFMEWAPG ARYCSLVGDF NQWSPTENCA REGHLGHDDF GYWFIILEDK LREGQEQDEY
201: FFQEYNYVDD YDKGDNGVDA EEIMSRMKEE YWEPGEIRSR QSQLEMVVKL YEQMFGPNGP QTEEELGEIP DAQTRYNEFK ASEKADSLSM WPSYDIIDNG
301: QPFDIFNVVT DRASFEKFQA KKPPLAYWVE MRKGRIAWLE KYVPTISHKD KYRVYFNTPD GALERVPAWA TYVLPDAEGK QSYAVHWEPP PEEIYKWRFG
401: RPKVKGSLRI YECHVGISGS EQKVSSFQEF TSKVLPHIKK AGYNAVQLIG VVEHKDYSSI GYKVTNYFAV SSRFGTPDDF KKLVDEAHGL GLVVLLDIVH
501: SYASSDELVG LSLYDGSNDC YFHSGKRGHH KYWGTRMFKY DDVDVLHFLL SNLNWWVTEY RIDGFQFHSL SSMLYTHNGF STFTGAMEEY CNQYVDKDAL
601: IYLILANEML HQLHPDIITI AEDATFYPGL CEPTTQGGLG FDYWVNLSVP EMWLWHLENV PEREWSMNKI IKVLVSSNQN MLSYAENHNQ SISGRKSFAE
701: IILNSGECSV GSVDDNLIRA SSLLKIIKLI TFTTSGGAYL NFMGNEFAHP ERVEFPMPSN DYSFQFANRQ WELLDKGFHK HVFNFDKDVM SLDENERIIS
801: RGSPNILHCD DTSMVISFTR GPFLFVFNFN PEVSHQSYHV GVEEAGEYQL IFNTDETKYG GCGTLKSSQY MRRTCDKRAD GCRNSLELAL PSRSAQVYKL
901: VRILRI

Best Arabidopsis Sequence Match ( AT3G20440.2 )
(BLAST)

001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI

Arabidopsis Description

SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.