CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.1	86.36
Zm00001d016684_P005	Maize	plastid	82.69	82.69
GSMUA_Achr5P16760_001	Banana	cytosol	39.6	81.54
Os02t0528200-01	Rice	plastid	80.32	78.18
TraesCS2B01G327300.4	Wheat	golgi	78.83	75.72
TraesCS2D01G308600.1	Wheat	plastid	78.58	75.48
HORVU2Hr1G077120.1	Barley	plastid	77.71	75.27
TraesCS2A01G310300.2	Wheat	plastid	77.96	75.06
OQU81503	Sorghum	plastid	75.59	73.4
AT5G03650.1	Thale cress	plastid	69.86	69.69
CDX70296	Canola	plastid	70.73	67.86
CDY10367	Canola	plastid	70.49	67.62
GSMUA_Achr6P07530_001	Banana	mitochondrion	70.98	66.9
Bra009521.1-P	Field mustard	plastid	70.86	66.86
CDX84127	Canola	plastid	69.49	66.35
VIT_08s0007g03750.t01	Wine grape	plastid	70.73	66.12
KRH67868	Soybean	mitochondrion	70.98	65.52
CDX75040	Canola	plastid	68.74	65.33
Bra005269.1-P	Field mustard	plastid	68.74	65.33
KRG96156	Soybean	mitochondrion	69.49	64.14
Solyc09g009190.2.1	Tomato	plastid	69.86	64.04
AT2G36390.1	Thale cress	plastid	68.37	63.99
CDY43722	Canola	plastid	68.74	52.32
OQU77158	Sorghum	plastid	50.56	48.8
EES01041	Sorghum	plastid	30.14	26.71
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	6.6	23.87

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	EntrezGene:8059621
InterPro:A-amylase/branching_C	InterPro:Branching_enzy	UniProt:C5XTD4	EnsemblPlants:EES06902	ProteinID:EES06902	ProteinID:EES06902.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0016787	GO:GO:0043169	GO:GO:0102752	InterPro:Glyco_hydro_13_N
InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642	EnsemblPlantsGene:SORBI_3004G163700	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF81296	unigene:Sbi.4641	UniParc:UPI0001A85BB4	RefSeq:XP_002453926.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:51292092..51304326

Molecular Weight (calculated)

90760.1 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.433

Length

803 amino acids

Sequence
(BLAST)

001: MAAFAVSGAA LGGAVRAPRL TGGEEGSLVF RRTGPFLTRA GGARVGGSGT HGAMRAAAAS SRKAVVVAEG ENDGLASKAD SAQFQSDELE VPDVTEETMC
101: DAGVADAQAL NRVRVVPPPS DGQKIFQIDP MLQGYKYHLE YRYSLYRRIR SDIDEHEGGL EAFSRSYEKF GFNRSAEGIT YREWAPGALS AALVGDFNNW
201: DPNADRMSKN EFGVWEIFLP NNADGTSPIP HGTRVKVRMD TPSGIKDSIP AWIKYSVQAP GEIPYDGLYY DPPEEVKYVF KHPKPKRPKS LRIYETHVGM
301: SSPEPKINTY ANFRDEVLPR IKKLGYNAVQ IMAIQEHSYY GSFGYHVTNF FAPSSRFGTP EDLKSMIDRA HELGLLVLMD VVHSHASSNT LDGLNGFDGT
401: DTHYFHSGPR GHHWMWDSRL FNYGNWEVLR FLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLQVTFTGN FNEYFGFATD VDAVVYLMLV NDLIHGLYPE
501: AVTIGEDVSG MPTFALPVQD GGVGFDYRMH MAVADKWIEL LKQSDEAWKM GDIVHTLTNR RWLEKCVTYA ESHDQALVGD KTIAFWLMDK DMYDFMALDR
601: PATPTIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGPQR LPSGKFIPGN NNSYDKCRRR FDLGDADYLR YRGMQEFDQA MQHLEQKYGF
701: MTSDHQYISR KHEEDKMIVF EKGDLVFVFN FHCNNSYFDY RIGCRKPGMY KVVLDSDAGL FGGFGRIHHA AEHFTTDCSH DNRPHSFSVY TPSRTCVVYA
801: PAE

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.