CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014844_P005	Maize	plastid	90.02	91.01
Os06t0726400-01	Rice	plastid	79.21	80.37
TraesCS7B01G472500.1	Wheat	plastid	76.92	80.2
TraesCS7D01G535400.2	Wheat	golgi	78.85	79.04
TraesCS7A01G549100.2	Wheat	plastid	78.97	77.66
HORVU0Hr1G022790.5	Barley	cytosol, plastid	46.15	75.29
TraesCS7B01G472400.1	Wheat	plastid	53.12	69.94
TraesCS7A01G549200.1	Wheat	plastid	53.25	69.76
TraesCS7D01G535500.1	Wheat	plastid	53.49	68.46
VIT_18s0001g00060.t01	Wine grape	plastid	69.11	68.45
HORVU0Hr1G022810.3	Barley	mitochondrion	78.25	67.74
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	65.26	67.54
Solyc04g082400.2.1	Tomato	plastid	67.43	66.47
HORVU0Hr1G022780.8	Barley	cytosol, plastid	47.36	65.23
KRH51616	Soybean	cytosol, mitochondrion, vacuole	50.96	64.44
TraesCS7B01G472300.1	Wheat	plastid	49.4	64.02
TraesCS7A01G549300.2	Wheat	plastid	49.28	63.57
KRH60937	Soybean	plastid	66.71	61.8
PGSC0003DMT400025846	Potato	cytosol	67.79	61.71
TraesCS7D01G535600.4	Wheat	plastid	49.16	60.15
EES06902	Sorghum	plastid	48.8	50.56
OQU81503	Sorghum	plastid	48.92	49.21
EES01041	Sorghum	plastid	30.77	28.26

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	EntrezGene:8069225
InterPro:A-amylase/branching_C	EMBL:AF169833	InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ProteinID:KXG20944.1	EnsemblPlants:OQU77158	ProteinID:OQU77158	ProteinID:OQU77158.1
ProteinID:OQU77159.1	ProteinID:OQU77160.1	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463
PANTHER:PTHR43651	PANTHER:PTHR43651:SF2	MetaCyc:PWY-5067	MetaCyc:PWY-622	UniProt:Q9M6P8	SMART:SM00642
EnsemblPlantsGene:SORBI_3010G273800	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI00000A63C2	RefSeq:XP_002439059.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:60687868..60695066

Molecular Weight (calculated)

94103.9 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.529

Length

832 amino acids

Sequence
(BLAST)

001: MLCLVSPSSS PTPLPPPRRS RSPADRAAPP GIAGGSNVRL SVLSVQCEAR RSGPRKVKSK FATAAIVQED KTMATAKGNV DHLPIYDLDP KLVKFKDHFS
101: YRMKKFLDQK GSIEENEGSL EEFSKGYLKF GINTSEDGTV YREWAPAAQE AELIGDFNEW NGANHKMEKD KFGVWSIKID HVKGKPAIPH NSKVKFRFLH
201: GGVWVDRIPA WIRYATADAS KFGAPYDGVH WDPPASERYT FKHPRPSKPA APRIYEAHVG MSGEKPAVST YREFADNVLP RIRANNYNTV QLMAVMEHSY
301: YASFGYHVTN FFAVSSRSGT PEDLKYLVDK AHSLGLRVLM DVVHSHASNN VTDGLNGYDV GQSTQESYFH MGDRGYHKLW DSRLFNYANW EVLRFLLSNL
401: RYWLDEFMFD GFRFDGVTSM LYHHHGINVG FTGNYQEYFS LDTDVDAVVY MMLANHLMHK LLPEATVVAE DVSGMPVLCR SVDEGGVGFD YRLAMAIPDR
501: WIDYLKNKDD SEWSMGEIAH TLTNRRYTEK CIAYAESHDQ SIVGDKTIAF LLMDKEMYTG MSDLQPASPT IDRGIALQKM IHFITMALGG DGYLNFMGNE
601: FGHPEWIDFP REGNNWSYDK CRRQWSLVDT DHLRYKYMNA FDQAMNALDE RFSFLLSSKQ IVSDMNDEKK VIVFERGDLV FVFNFHPKKT YDGYKVGCDL
701: PGKYRVALDS DAFVFGGHGR VGHDVDHFTS PEGIPGVPET NFNNRPNSFK VLSPPRTCVA YYRVDEEAER LQAKAETTGS RKTSPDIIDV DATPVKTSTA
801: TKEDKEATSG GKEDASKKGW KFARQSSNKN TK

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.