CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036363_P001	Maize	plastid	25.84	60.93
KRH60937	Soybean	plastid	82.67	60.58
HORVU0Hr1G022790.5	Barley	cytosol, plastid	43.77	56.47
Solyc04g082400.2.1	Tomato	plastid	71.73	55.92
VIT_18s0001g00060.t01	Wine grape	plastid	71.28	55.83
TraesCS7B01G472500.1	Wheat	plastid	62.61	51.63
Zm00001d014844_P005	Maize	plastid	64.44	51.52
Os06t0726400-01	Rice	plastid	64.13	51.46
PGSC0003DMT400025846	Potato	cytosol	71.43	51.42
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	62.31	50.99
OQU77158	Sorghum	plastid	64.44	50.96
TraesCS7D01G535400.2	Wheat	golgi	62.31	49.4
TraesCS7B01G472400.1	Wheat	plastid	47.11	49.05
TraesCS7A01G549200.1	Wheat	plastid	47.26	48.98
TraesCS7A01G549100.2	Wheat	plastid	62.46	48.58
HORVU0Hr1G022780.8	Barley	cytosol, plastid	44.22	48.18
TraesCS7D01G535500.1	Wheat	plastid	47.57	48.15
TraesCS7B01G472300.1	Wheat	plastid	44.68	45.79
TraesCS7A01G549300.2	Wheat	plastid	44.83	45.74
TraesCS7D01G535600.4	Wheat	plastid	44.38	42.94
HORVU0Hr1G022810.3	Barley	mitochondrion	62.61	42.87
KRH67868	Soybean	mitochondrion	50.0	37.82
KRG96156	Soybean	mitochondrion	50.0	37.82
KRH56220	Soybean	cytosol	3.19	27.63
KRG98710	Soybean	plastid	33.43	24.47

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
UniProt:A0A0R0JAD6	EMBL:ACUP02003382	InterPro:Branching_enzy	EnsemblPlantsGene:GLYMA_06G018000	GO:GO:0003674	GO:GO:0003824
GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRH51616	ProteinID:KRH51616	ProteinID:KRH51616.1
PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF2	MetaCyc:PWY-5067
MetaCyc:PWY-622	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0006EDA0AB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:1359828..1368182

Molecular Weight (calculated)

75987.4 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.437

Length

658 amino acids

Sequence
(BLAST)

001: IVRSKQYLVT QKPVDLALGY RNPHGYGFCF ALRRSIQEGV TSHFKGRAVM TDDKSTMSST EEDLENIGIF RICPSLKPYK DHFKYRMKRY VDQKKLIEEY
101: EGGLEEFAQA TFPVYRNSVY GRWEAQIIGD FNGWDGSNHQ IKNQFGVWSI KIPDTDGNSA IPHNSRVKFR FRHGDGVWVD RISAWIKYAT PYDGVYWDPP
201: LSERYQFKYP RPPKPKTPRI YEAHVGMSSS EPRINSYREF ADEILPHIWA NNYNTVQLMA VMEHSYYASF GYHVTNFFAV SSRSTPEDLK YPIDKAHSLG
301: LQVLMDVIHS LASNNVTDGL NGFDVGQTSQ DSYFHTGDRG YHKLWDSRLF NYANWEVLRF LLSNLRWWLH ELKFDGFRFD GVTSMLYHHH GINIVFTGDY
401: NEYFSEATDV VLYILPDATV IAEDVSGMPG LGQPVSDGGI GFDYRLAMAI PDKWIDYLKN KNDYAWSMKE ISWSLTNRRY TEKCVSYAES HDQMIHFITM
501: ALGGEGYLNF MGNEFGHPEW IDFPREGNGW SNEKCRLCCL SEIYVIILFL ELVQFMNAFD RAMNLLDDNF SFLASTKQIV SSADDDDKVN MLPNDCYIVF
601: ERGDLIFVFN FHPENTYEGY KVGCDLPGKY RVVLDSDAWE FGGHGRVRSP NLSGDGYG

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.