CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96156	Soybean	mitochondrion	91.26	91.26
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	6.9	90.91
HORVU2Hr1G072500.34	Barley	cytosol	60.57	85.69
GSMUA_Achr5P16760_001	Banana	cytosol	37.7	84.1
AT5G03650.1	Thale cress	plastid	70.34	76.02
VIT_08s0007g03750.t01	Wine grape	plastid	74.14	75.09
OQU81503	Sorghum	plastid	70.0	73.64
CDX70296	Canola	plastid	70.57	73.36
CDY10367	Canola	plastid	70.34	73.12
Bra009521.1-P	Field mustard	plastid	70.92	72.5
TraesCS2D01G290800.4	Wheat	plastid	68.74	72.48
TraesCS2B01G309500.3	Wheat	plastid	68.97	72.46
TraesCS2A01G293400.1	Wheat	plastid	68.62	72.1
Solyc09g009190.2.1	Tomato	plastid	72.18	71.69
GSMUA_Achr6P07530_001	Banana	mitochondrion	70.0	71.48
EES06902	Sorghum	plastid	65.52	70.98
CDX84127	Canola	plastid	68.05	70.39
CDX75040	Canola	plastid	68.05	70.06
Bra005269.1-P	Field mustard	plastid	68.05	70.06
Os02t0528200-01	Rice	plastid	66.32	69.94
TraesCS2D01G308600.1	Wheat	plastid	66.78	69.5
TraesCS2B01G327300.4	Wheat	golgi	66.67	69.38
AT2G36390.1	Thale cress	plastid	68.39	69.35
TraesCS2A01G310300.2	Wheat	plastid	66.32	69.18
HORVU2Hr1G077120.1	Barley	plastid	65.75	69.0
Zm00001d016684_P005	Maize	plastid	63.45	68.74
Os04t0409200-00	Rice	plastid	18.85	64.31
KRH56220	Soybean	cytosol	4.94	56.58
CDY43722	Canola	plastid	68.28	56.3
Zm00001d003817_P002	Maize	plastid	68.74	55.06
KRH51616	Soybean	cytosol, mitochondrion, vacuole	37.82	50.0
KRH60937	Soybean	plastid	46.67	45.21
KRG98710	Soybean	plastid	30.0	29.03
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	7.36	28.83

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100816963	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80
InterPro:A-amylase/branching_C	EMBL:ACUP02002085	InterPro:Branching_enzy	EnsemblPlantsGene:GLYMA_03G192300	GO:GO:0003674	GO:GO:0003824
GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	UniProt:I1JPY7
InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRH67868	ProteinID:KRH67868
ProteinID:KRH67868.1	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF81296	UniParc:UPI0002339605	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:40322245..40338874

Molecular Weight (calculated)

99038.4 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.452

Length

870 amino acids

Sequence
(BLAST)

001: MVYTISGIRF PVFPSLHNLS FRGDRRTASL PVFLRNNSFS RKTLAVKSSH DSDSLSSAIA ESDKVLIPQD QDNSASLTDQ LETPDITSED AQNLEDLTME
101: DEDKYNISEA ASGYRQIEDG QGSVVSSLVD VSIPAKKMSV SVGRKAKIVS DEVKPKIIPP PGAGQKIYEI DPSLLAHREH LDFRYGQYKR LRYEIDKHEG
201: GLDTFSRGYE KFGFQRSATG ITYREWAPGA KSAALIGDFN NWNPNADVMT KNEFGVWEIF LPNNVDGSPP IPHGSRVKIR MDTPSGIKDS IPAWIKFSVQ
301: APGEIPYSGI YYDPPEEEKY VFKHPLPKRP KSLRIYESHI GMSSPEPKIN TYVNFRDDVL PRIKRLGYNA VQIMAIQEHS YYASFGYHVT NFFAPSSRFG
401: TPEELKSLID RAHELGLLVL MDIVHSHASN NTLDGLNMFD GTDGHYFHPG SRGYHWMWDS RLFNYGSWEV LRYLLSNSRW WLDEYKFDGF RFDGVTSMMY
501: THHGLEVAFT GNYNEYFGFA TDVDAVIYLM LTNDVIHGLF PEAVTIGEDV SGMPTFCLPT QDGGVGFDYR LHMAIADKWI EILKKNDEDW KMGDIVHTLT
601: NRRWLEKCVA YAESHDQALV GDKTIAFWLM DKDMYDFMAL DRPSTPIIDR GIALHKMIRL ITMGLGGEGY LNFMGNEFGH PEWIDFPRGD QHLPTGVIVP
701: GNNNSFDKCR RRFDLGDADY LRYRGMQEFD QAMQHLEEKF GFMTAEHQYI SRKNEGDKII VFERGNLIFV FNFHWNNSYS DYRVGCSTPG KYKIVLDSDD
801: ALFGGFSRLN HTAEYFTSEG WYDDRPRSFL IYAPSRTAVV YALADDVEPT LADEAEPALA DEAEPEPVDP

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.