CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70296	Canola	plastid	95.1	95.1
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.29	92.42
AT5G03650.1	Thale cress	plastid	81.24	84.47
HORVU2Hr1G072500.34	Barley	cytosol	61.89	84.23
GSMUA_Achr5P16760_001	Banana	cytosol	38.11	81.79
OQU81503	Sorghum	plastid	71.45	72.31
CDX84127	Canola	plastid	72.64	72.29
TraesCS2D01G290800.4	Wheat	plastid	70.49	71.52
TraesCS2B01G309500.3	Wheat	plastid	70.61	71.38
CDX75040	Canola	plastid	72.04	71.36
TraesCS2A01G293400.1	Wheat	plastid	70.49	71.26
EES06902	Sorghum	plastid	67.62	70.49
KRH67868	Soybean	mitochondrion	73.12	70.34
Os02t0528200-01	Rice	plastid	68.82	69.82
Solyc09g009190.2.1	Tomato	plastid	72.88	69.63
VIT_08s0007g03750.t01	Wine grape	plastid	71.45	69.62
GSMUA_Achr6P07530_001	Banana	mitochondrion	70.49	69.25
KRG96156	Soybean	mitochondrion	71.8	69.08
Zm00001d016684_P005	Maize	plastid	65.71	68.49
TraesCS2B01G327300.4	Wheat	golgi	67.74	67.82
HORVU2Hr1G077120.1	Barley	plastid	67.14	67.79
TraesCS2D01G308600.1	Wheat	plastid	67.26	67.34
TraesCS2A01G310300.2	Wheat	plastid	66.79	67.03
Os04t0409200-00	Rice	plastid	19.12	62.75
CDY43722	Canola	plastid	73.0	57.91
Zm00001d003817_P002	Maize	plastid	70.49	54.33
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	8.24	31.08
CDY54647	Canola	plastid	30.35	28.35
CDY29828	Canola	plastid	30.35	28.35

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
GO:A0A078FBH4	UniProt:A0A078FBH4	InterPro:Branching_enzy	EnsemblPlants:CDY10367	ProteinID:CDY10367	ProteinID:CDY10367.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	EnsemblPlantsGene:GSBRNA2T00032268001	InterPro:Glyco_hydro_13_N
InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF81296	UniPathway:UPA00164	UniParc:UPI0004EE8C04	SEG:seg	:	:

Description

BnaCnng02680DBnaCnng02680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBH4]

Coordinates

chrLK032003:-:83856..89936

Molecular Weight (calculated)

95260.6 Da

IEP (calculated)

5.703

GRAVY (calculated)

-0.426

Length

837 amino acids

Sequence
(BLAST)

001: MVVVHGVSLT PGVLVSSFPL PPLSSSNARS LNSTVSFFLK KRPLSRKIFA GNQSAKFNSK SQAVSKKVLV PDNVDDGASL VTDDALQGPS SVSQAPQILN
101: LESQTMEEDG TVITEDQASV SVNSSRVVKE KEVKPRTVPP PGNGQIIYEI DPMLQSYKDH LDYRYKQYRR LREEIDKYEG GLEAFSRGYE KLGFLRSDAG
201: ITYREWAPGA KSASLIGDFN NWNPNADIMT RNEFGVWEIF LPNNTDGSPA IPHGSRVKIR MDTPSGIKDS IPAWIKFSVQ APGEIPFNGI YYDPPEEEKY
301: VFKHPQPKRP KSLRIYESHV GMSSTEPMIN TYANFRDDVL PRIKKLGYNA VQIMAIQEHS YYASFGYHVT NFFAPSSRCG TPEDLKSLID RAHELGMIVL
401: MDIVHSHASK NTLDGLNMFD GTDAHYFHPG PRGYHWMWDS RLFNYGSWEV LRYLLSNARW WLEEYKFDGF RFDGVTSMMY THHGLSVGFT GNYTEYFGLE
501: TDVDAVNYLM LVNDMIHGLY PEAVTVGEDV SGMPTFCIPV QDGGVGFDYR LHMAIADKWI EILKKRDEDW KMGDIIYTLT NRRWSEKCIA YAESHDQALV
601: GDKTIAFWLM DKDMYDFMAV DRPSTPLVDR GIALHKMIRL ITMGLGGEGY LNFMGNEFGH PEWIDFPRGE QRLSDGSVIP GNNFSYDKCR RRFDLGDADY
701: LRYHGLQEFD RAMQNLEEKY GFMTSEHLFI SRKDEGDRVI VFERGDLVFV FNFHWTSSYF DYRIGCSKPG KYKIVLDSDD PLFGGFGRLD RTAEYFTFEG
801: SYDGRPSSFM VYTPCRTAVV YALADRDDGL ETLGPKP

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.