Factsheet for TraesCS2D01G290800.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G072500.34	Barley	cytosol	73.45	98.54
TraesCS2A01G293400.1	Wheat	plastid	96.0	95.65
TraesCS2B01G309500.3	Wheat	plastid	95.27	94.93
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.15	89.39
GSMUA_Achr5P16760_001	Banana	cytosol	39.64	83.85
OQU81503	Sorghum	plastid	79.52	79.32
Os04t0409200-00	Rice	plastid	22.79	73.73
TraesCS2D01G308600.1	Wheat	plastid	73.94	72.97
AT5G03650.1	Thale cress	plastid	70.79	72.55
GSMUA_Achr6P07530_001	Banana	mitochondrion	72.97	70.66
CDY10367	Canola	plastid	71.52	70.49
CDX70296	Canola	plastid	71.39	70.37
Bra009521.1-P	Field mustard	plastid	71.39	69.21
KRH67868	Soybean	mitochondrion	72.48	68.74
VIT_08s0007g03750.t01	Wine grape	plastid	70.3	67.52
KRG96156	Soybean	mitochondrion	71.15	67.47
CDX84127	Canola	plastid	68.48	67.18
Solyc09g009190.2.1	Tomato	plastid	71.27	67.12
Bra005269.1-P	Field mustard	plastid	68.48	66.86
CDX75040	Canola	plastid	68.24	66.63
AT2G36390.1	Thale cress	plastid	67.88	65.27
Zm00001d003817_P002	Maize	plastid	80.0	60.77
CDY43722	Canola	plastid	68.24	53.36
TraesCS7D01G535400.2	Wheat	golgi	49.21	48.92
TraesCS7D01G535500.1	Wheat	plastid	35.76	45.38
TraesCS7D01G535600.4	Wheat	plastid	32.85	39.85
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	8.48	31.53
TraesCS7D01G344000.1	Wheat	plastid	30.18	27.24

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF1
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS2D01G290800	EnsemblPlants:TraesCS2D01G290800.4
TIGR:cd02854	TIGR:cd11321	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:372924514..372934730

Molecular Weight (calculated)

93189.6 Da

IEP (calculated)

5.629

GRAVY (calculated)

-0.460

Length

825 amino acids

Sequence
(BLAST)

001: MATFAVSGAT LGVARAGVGV ARAGSERRGG ADLPSLLLRK KDSSRAVLSR AASPGKVLVP DGESDDLASP AQPEELQVHT LVPIPEDIEE QTAEVNMTGG
101: TAEKLQSSEP TQGIVETITD GVTKGVKELV VGEKPRVVPK PGDGQKIYEI DPTLKDFRSH LDYRYSEYKR IRAAIDQHEG GLEAFSRGYE KLGFTRSAEG
201: ITYREWAPGA HSAALVGDFN NWNPNADAMT RDDYGVWEIF LPNNADGSSA IPHGSRVKIR MDTPSGVKDS ISAWIKFSVQ APGEIPFNGI YYDPPEEEKY
301: VFQHPQPKRP ESLRIYESHI GMSSPEPKIN SYANFRDEVL PRIKRLGYNA VQIMAIQEHS YYASFGYHVT NFFAPSSRFG TPEDLKSLID RAHELGLLVL
401: MDIVHSHSSN NTLDGLNGFD GTDTHYFHGG PRGHHWMWDS RLFNYGSWEV LRFLLSNARW WLEEYKFDGF RFDGVTSMMY THHGLQMTFT GNYGEYFGFA
501: TDVDAVVYLM LVNDLIHGLY PDAVSIGEDV SGMPTFCIPV PDGGVGFDYR LHMAVADKWI ELLKQSDESW KMGDIVHTLT NRRWLEKCVT YAESHDQALV
601: GDKTIAFWLM DKDMYDFMAL DRPSTPRIDR GIALHKMIRL VTMGLGGEGY LNFMGNEFGH PEWIDFPRGP QTLPTGKVLP GNNNSYDKCR RRFDLGDADF
701: LRYRGMQEFD QAMQHLEEKY GFMTSEHQYV SRKHEEDKVI IFERGDLVFV FNFHWSNSFF DYRVGCSKPG KYKVALDSDD ALFGGFSRLD HDVDYFTTEH
801: PHDNRPRSFS VYTPSRTAVV YALTE

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.