Factsheet for GSMUA_Achr5P16770_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0409200-00	Rice	plastid	92.42	23.92
HORVU2Hr1G072500.34	Barley	cytosol	89.39	9.59
GSMUA_Achr6P07530_001	Banana	mitochondrion	96.97	7.51
AT5G03650.1	Thale cress	plastid	90.91	7.45
OQU81503	Sorghum	plastid	92.42	7.38
CDX70296	Canola	plastid	92.42	7.29
CDY10367	Canola	plastid	92.42	7.29
Zm00001d016684_P005	Maize	plastid	87.88	7.22
Bra009521.1-P	Field mustard	plastid	92.42	7.17
TraesCS2D01G290800.4	Wheat	plastid	89.39	7.15
TraesCS2B01G309500.3	Wheat	plastid	89.39	7.13
TraesCS2A01G293400.1	Wheat	plastid	89.39	7.13
VIT_08s0007g03750.t01	Wine grape	plastid	92.42	7.1
EES06902	Sorghum	plastid	86.36	7.1
TraesCS2D01G308600.1	Wheat	plastid	89.39	7.06
TraesCS2B01G327300.4	Wheat	golgi	89.39	7.06
KRG96156	Soybean	mitochondrion	92.42	7.01
HORVU2Hr1G077120.1	Barley	plastid	87.88	7.0
Os02t0528200-01	Rice	plastid	86.36	6.91
KRH67868	Soybean	mitochondrion	90.91	6.9
TraesCS2A01G310300.2	Wheat	plastid	86.36	6.83
CDX84127	Canola	plastid	81.82	6.42
AT2G36390.1	Thale cress	plastid	83.33	6.41
Bra005269.1-P	Field mustard	plastid	80.3	6.27
CDX75040	Canola	plastid	80.3	6.27
Solyc09g009190.2.1	Tomato	plastid	81.82	6.16
Zm00001d003817_P002	Maize	plastid	93.94	5.71
CDY43722	Canola	plastid	83.33	5.21
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	43.94	3.61
GSMUA_Achr6P13530_001	Banana	plastid	37.88	2.75
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	3.03	0.9
GSMUA_Achr5P16760_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16770_001	EnsemblPlants:GSMUA_Achr5T16770_001	EnsemblPlantsGene:GSMUA_Achr5G16770_001	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0003844	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:Branching_enzy	KEGG:00500+2.4.1.18	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	UniParc:UPI00029628C8	UniProt:M0SZ56	MapMan:35.1	:	:

Description

1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G16770_001]

Coordinates

chr5:-:15350531..15350932

Molecular Weight (calculated)

7449.8 Da

IEP (calculated)

5.597

GRAVY (calculated)

-0.626

Length

66 amino acids

Sequence
(BLAST)

1: MDTPSGIKDS IPAWIKFSVQ APGEIPYNGI YYDPPEEEKY VFQHPQPKAP KSLRIYESHV GMSSPV

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.