Factsheet for Os04t0409200-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	nucleus

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	23.92	92.42
TraesCS2A01G293400.1	Wheat	plastid	74.9	23.07
OQU81503	Sorghum	plastid	74.51	22.97
TraesCS2B01G309500.3	Wheat	plastid	74.51	22.95
TraesCS2D01G290800.4	Wheat	plastid	73.73	22.79
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	18.04	20.72
Os02t0528200-01	Rice	plastid	63.53	19.64
AT5G03650.1	Thale cress	plastid	61.96	19.63
CDX70296	Canola	plastid	63.53	19.35
CDY10367	Canola	plastid	62.75	19.12
Bra009521.1-P	Field mustard	plastid	63.53	19.04
KRG96156	Soybean	mitochondrion	64.31	18.85
KRH67868	Soybean	mitochondrion	64.31	18.85
GSMUA_Achr6P07530_001	Banana	mitochondrion	61.96	18.54
VIT_08s0007g03750.t01	Wine grape	plastid	62.35	18.51
CDX84127	Canola	plastid	60.78	18.43
Bra005269.1-P	Field mustard	plastid	59.22	17.87
Solyc09g009190.2.1	Tomato	plastid	61.18	17.81
CDX75040	Canola	plastid	58.43	17.63
Zm00001d003817_P002	Maize	plastid	74.51	17.5
AT2G36390.1	Thale cress	plastid	58.43	17.37
HORVU2Hr1G072500.34	Barley	cytosol	41.57	17.24
CDY43722	Canola	plastid	58.43	14.12
Os06t0726400-01	Rice	plastid	32.94	10.24
Os06t0367100-01	Rice	plastid	24.71	6.98
GSMUA_Achr5P16760_001	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	MapMan:35.1	UniProt:A0A0P0W9U3	ProteinID:BAS89100.1	InterPro:Branching_enzy
GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016787	InterPro:Glyco_hydro_13_N	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlantsGene:Os04g0409200
EnsemblPlants:Os04t0409200-00	PFAM:PF02922	PANTHER:PTHR43651	PANTHER:PTHR43651:SF1	SUPFAM:SSF81296	UniParc:UPI0003938A39
SEG:seg	:	:	:	:	:

Description

STARCH BRANCHING ENZYME 4Similar to H0321H01.10 protein. (Os04t0409200-00)

Coordinates

chr4:-:20240211..20242336

Molecular Weight (calculated)

28666.3 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.742

Length

255 amino acids

Sequence
(BLAST)

001: IPDDNKVKPF EEEEEIPAVA EASIKVVAED KLESSEVIQD IEENVTEGVI KDADEPTVED KPRVIPPPGD GQKIYQIDPM LEGFRNHLDY RYSEYKRMRA
101: AIDQHEGGLD AFSRGYEKLG FTRSAEGITY REWAPGAQSA ALVGDFNNWN PNADTMTRNE YGVWEISLPN NADGSPAIPH GSRVKIRMDT PSGVKDSIPA
201: WIKFAVQAPG EIPYNGIYYD PPEEEKYVFQ HPQPKRPNSL RIYESHIGMS SPVCQ

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.