Factsheet for Zm00001d003817_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	5.71	93.94
HORVU2Hr1G072500.34	Barley	cytosol	50.92	89.92
OQU81503	Sorghum	plastid	64.64	84.89
GSMUA_Achr5P16760_001	Banana	cytosol	29.1	81.03
TraesCS2D01G290800.4	Wheat	plastid	60.77	80.0
TraesCS2A01G293400.1	Wheat	plastid	60.41	79.23
TraesCS2B01G309500.3	Wheat	plastid	60.22	78.99
Os04t0409200-00	Rice	plastid	17.5	74.51
AT5G03650.1	Thale cress	plastid	53.31	71.93
Zm00001d016684_P005	Maize	plastid	52.85	71.48
CDX70296	Canola	plastid	54.33	70.49
CDY10367	Canola	plastid	54.33	70.49
GSMUA_Achr6P07530_001	Banana	mitochondrion	55.06	70.19
Bra009521.1-P	Field mustard	plastid	54.14	69.1
KRG96156	Soybean	mitochondrion	55.25	68.97
KRH67868	Soybean	mitochondrion	55.06	68.74
VIT_08s0007g03750.t01	Wine grape	plastid	54.05	68.34
Solyc09g009190.2.1	Tomato	plastid	54.51	67.58
CDX84127	Canola	plastid	51.84	66.94
CDX75040	Canola	plastid	52.03	66.86
Bra005269.1-P	Field mustard	plastid	51.93	66.75
AT2G36390.1	Thale cress	plastid	51.84	65.62
Zm00001d036363_P001	Maize	plastid	16.21	63.08
CDY43722	Canola	plastid	52.58	54.12
Zm00001d014844_P005	Maize	plastid	37.38	49.33
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	6.63	32.43
Zm00001d011301_P001	Maize	plastid	23.2	28.03
Zm00001d033399_P001	Maize	endoplasmic reticulum, vacuole	0.83	7.69

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	EntrezGene:542342
InterPro:A-amylase/branching_C	UniProt:A0A1D6EBQ6	InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	ProteinID:ONM17780.1	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922
PANTHER:PTHR43651	PANTHER:PTHR43651:SF1	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
UniParc:UPI000845778D	EnsemblPlantsGene:Zm00001d003817	EnsemblPlants:Zm00001d003817_P002	EnsemblPlants:Zm00001d003817_T002	SEG:seg	:

Description

starch branching enzyme3Starch branching enzyme IIa

Coordinates

chr2:+:60752443..60762861

Molecular Weight (calculated)

121792.0 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.458

Length

1086 amino acids

Sequence
(BLAST)

0001: MARNALSAVG SRSAAAPPQR HVSVRCHLRP SGAGARGRRR PRFSTGPPPW RLFPFHIPMQ MQRQCLLPPP PHTLLPHSFP PHSPAQPCSL PRANNISRRS
0101: SSSASAAATP HTRFPWAARV KERARAYVRA GGWTRICCWV GRGMASFAVS GARLGVVRPG GSARSGGERR SAVDLPSVLF RRKDAFSRTV LSCAGAPGKV
0201: LVPGGGSDDL LSSAEPVVDT QPEELQIPEA ELTVEKTSSS PTQTTSAVAE ASSGVEAEER PELSEVIGVG GTGGTKIDGA GIKAKAPLVE EKPRVIPPPG
0301: DGQRIYEIDP MLEGFRGHLD YRYSEYKRLR AAIDQHEGGL DAFSRGYEKL GFTRSAEGIT YREWAPGAYV CSPQSAALVG DFNNWNPNAD AMARNEYGVW
0401: EIFLPNNADG SPAIPHGSRV KIRMDTPSGV KDSIPAWIKF SVQAPGEIPY NGIYYDPPEE EKYVFKHPQP KRPKSLRIYE SHVGMSSPEP KINTYANFRD
0501: EVLPRIKKLG YNAVQIMAIQ EHSYYASFGY HVTNFFAPSS RFGTPEDLKS LIDKAHELGL LVLMDIVHSH SSNNTLDGLN GFDGTDTHYF HGGPRGHHWM
0601: WDSRLFNYGS WEVLRFLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV TFTGNYGEYF GFATDVDAVV YLMLVNDLIR GLYPEAVSIG EDVSGMPTFC
0701: IPVQDGGVGF DYRLHMAVPD KWIELLKQSD EYWEMGDIVH TLTNRRWLEK CVTYCESHDQ ALVGDKTIAF WLMDKDMYDF MALDRPSTPR IDRGIALHKM
0801: IRLVTMGLGG EGYLNFMGNE FGHPEWIDFP RGPQSLPNGS VIPGNNNSFD KCRRRFDLGD ADYLRYRGMQ EFDQAMQHLE GKYEFMTSDH SYVSRKHEED
0901: KVIIFERGDL VFVFNFHWSN SYFDYRVGCF KPGKYKIVLD SDDGLFGGFS RLDHDAEYFT AVSPGSEYCG SLGSEYCSTQ SASLILLPPY NILVDNDPFT
1001: DSYYRTGRMT TGRVLSRSMH PAEQPSYMHL QVQRTNRAQQ RLLGKNFRGM CCWWTDTTAT RDAARCCPRD HVAGRSAIQV DRLAYR

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.