Factsheet for VIT_08s0007g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.1	92.42
GSMUA_Achr5P16760_001	Banana	cytosol	37.83	83.33
HORVU2Hr1G072500.34	Barley	cytosol	59.49	83.09
AT5G03650.1	Thale cress	plastid	71.48	76.27
KRH67868	Soybean	mitochondrion	75.09	74.14
Solyc09g009190.2.1	Tomato	plastid	75.55	74.09
GSMUA_Achr6P07530_001	Banana	mitochondrion	72.53	73.12
OQU81503	Sorghum	plastid	70.31	73.04
CDX70296	Canola	plastid	70.43	72.28
KRG96156	Soybean	mitochondrion	72.99	72.07
CDY10367	Canola	plastid	69.62	71.45
AT2G36390.1	Thale cress	plastid	71.36	71.45
Bra005269.1-P	Field mustard	plastid	69.85	71.01
CDX84127	Canola	plastid	69.5	70.99
Bra009521.1-P	Field mustard	plastid	70.31	70.98
EES06902	Sorghum	plastid	66.12	70.73
CDX75040	Canola	plastid	69.27	70.41
TraesCS2D01G290800.4	Wheat	plastid	67.52	70.3
TraesCS2B01G309500.3	Wheat	plastid	67.75	70.29
TraesCS2A01G293400.1	Wheat	plastid	67.52	70.05
Os02t0528200-01	Rice	plastid	67.05	69.82
TraesCS2D01G308600.1	Wheat	plastid	66.24	68.06
TraesCS2B01G327300.4	Wheat	golgi	66.12	67.94
Zm00001d016684_P005	Maize	plastid	63.45	67.87
HORVU2Hr1G077120.1	Barley	plastid	65.42	67.79
TraesCS2A01G310300.2	Wheat	plastid	65.66	67.63
Os04t0409200-00	Rice	plastid	18.51	62.35
CDY43722	Canola	plastid	69.5	56.59
Zm00001d003817_P002	Maize	plastid	68.34	54.05
VIT_18s0001g00060.t01	Wine grape	plastid	47.26	48.33
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	9.31	36.04
VIT_19s0090g00920.t01	Wine grape	plastid	29.57	28.35

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100254475	wikigene:100254475	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5
Gene3D:3.20.20.80	InterPro:A-amylase/branching_C	InterPro:Branching_enzy	ProteinID:CBI30261	ProteinID:CBI30261.3	UniProt:D7TJ35
EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
EntrezGene:LOC100254475	wikigene:LOC100254475	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463
PANTHER:PTHR43651	PANTHER:PTHR43651:SF1	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
TIGR:TC65671	UniParc:UPI00015C92A3	ArrayExpress:VIT_08s0007g03750	EnsemblPlantsGene:VIT_08s0007g03750	EnsemblPlants:VIT_08s0007g03750.t01	RefSeq:XP_002277213
RefSeq:XP_002277213.2	RefSeq:XP_010654050.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:17681264..17725129

Molecular Weight (calculated)

97875.3 Da

IEP (calculated)

5.504

GRAVY (calculated)

-0.469

Length

859 amino acids

Sequence
(BLAST)

001: MVYTLSGIRL PVVSSANNRS VLSISSGRRT ANLSLFSKKS SFSRKIFAGK SSYDSDSSSL RIAASDKTLV PGSQIDGSSS STGQIEVPDT VLEDPQVLQD
101: VDDLTMEYDN DINKPTNDCS KVDENQDSVH SDLIDNDDKV QGAEKAITLS GTGTIKKEEA RPKSIPPPGT GQRIYEIDPF LRGYREHLDY RFGQYKKMRE
201: AIDKYEGGLD LFSRGYEKMG FTRSATGITY REWAPGAKSA ALIGDFNNWN PNADIMTQNE FGVWEIFLPN NADGSPPIPH GSRVKIHMDT PSGIKDSIPA
301: WIEFSVQAPG EIPYNGIYYD PPEEEKYVFQ HPQPKKPKSL RIYEAHVGMS SMEPVVNTYA NFRDDVLPRI KRLGYNAVQI MAIQEHSYYG SFGYHVTNFF
401: APSSRCGTPD DLKSLIDKAH ELGLLVLMDI VHSHASNNVL DGLNRFDGTD SHYFHSGSRG YHWMWDSRLF NYGSWEVLRF LLSNARWWLD EYKFDGFRFD
501: GVTSMMYTHH GLQVEFTGNY NEYFGYATDV DAMVYLMLVN DLIHGLFPEA VTIGEDVSGM PAFCIPVQDG GVGFDYRLHM AIADKWIELL KKPDEYWKMG
601: DIIHTLTNRR WLEKCVAYAE SHDQALVGDK TIAFWLMDKD MYEFMALDRP TTPAIDRGIA LHKMIRLITM GLGGEGYLNF MGNEFGHPEW IDFPRGDQHL
701: PNGKRILGNN FSFDKCRRRF DLGDAEYLRY RGLQEFDQAM QHLEEKYGFM TSEHQYISRK DEGDRIVVFE KGDLVFVFNF HWTNSYSAYR VGCLKPGKYK
801: IVLDSDLLLF GGFNRLDHNA EYFSSDGWYD DRPHSFLIYA PCRTVVVYAP DKELEPVKG

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.