Factsheet for TraesCS2B01G327300.4

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G308600.1	Wheat	plastid	97.97	97.97
TraesCS2A01G310300.2	Wheat	plastid	97.49	97.72
HORVU2Hr1G077120.1	Barley	plastid	93.54	94.33
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.06	89.39
GSMUA_Achr5P16760_001	Banana	cytosol	37.2	79.74
EES06902	Sorghum	plastid	75.72	78.83
Os02t0528200-01	Rice	plastid	77.51	78.55
Zm00001d016684_P005	Maize	plastid	72.01	74.97
TraesCS2B01G309500.3	Wheat	plastid	73.21	73.91
AT5G03650.1	Thale cress	plastid	66.63	69.19
CDX70296	Canola	plastid	67.94	67.86
CDY10367	Canola	plastid	67.82	67.74
GSMUA_Achr6P07530_001	Banana	mitochondrion	68.78	67.49
Bra009521.1-P	Field mustard	plastid	68.18	66.98
KRH67868	Soybean	mitochondrion	69.38	66.67
VIT_08s0007g03750.t01	Wine grape	plastid	67.94	66.12
CDX84127	Canola	plastid	65.91	65.52
KRG96156	Soybean	mitochondrion	68.18	65.52
CDX75040	Canola	plastid	65.91	65.21
Bra005269.1-P	Field mustard	plastid	65.43	64.73
AT2G36390.1	Thale cress	plastid	65.79	64.1
Solyc09g009190.2.1	Tomato	plastid	66.87	63.81
CDY43722	Canola	plastid	65.43	51.85
TraesCS7B01G472500.1	Wheat	plastid	47.97	50.25
TraesCS7B01G472400.1	Wheat	plastid	34.09	45.09
TraesCS7B01G472300.1	Wheat	plastid	31.82	41.43
TraesCS7B01G248000.1	Wheat	plastid	28.83	26.37
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	6.22	23.42

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF1
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS2B01G327300	EnsemblPlants:TraesCS2B01G327300.4
TIGR:cd02854	TIGR:cd11321	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:468648842..468670480

Molecular Weight (calculated)

94372.8 Da

IEP (calculated)

5.806

GRAVY (calculated)

-0.499

Length

836 amino acids

Sequence
(BLAST)

001: MASPAFAVSA AGLARPSTPR SGGAERRGRG VELQSPSLLF GRNKGTRSPR AVSVGGSGWR VVMRAGGPSG EVMIPDGGSG GTPPSIDGPV QFDSDDLKVA
101: FIDDEPSLQD EGEDSIWSSE TNQVTEEIDV EGTNIMDKES STGEKLRIVP PPGNGQQIYE IDPTLRDFKY HLEYRYSLYR RIRSDIDEHE GGMDVFSRGY
201: EKFGFMRSAE GITYREWAPG ADSAALVGDF NNWDPNADHM SKNDLGVWEI FLPNNADGSP PIPHGSRVKV RMDTPSGIKD SIPAWIKYSV QTPGDIPYNG
301: IYYDPPEEEK YVFKHPQPKR PKSLRIYETH VGMSSPEPKI NTYANFRDEV LPRIKRLGYN AVQIMAIQEH SYYGSFGYHV TNFFAPSSRF GSPEDLKSLI
401: DRAHELGLVV LMDVVHSHAS NNTLDGLNGF DGTDTHYFHG GSRGHHWMWD SRVFNYGNKE VIRFLLSNAR WWLEEYKFDG FRFDGATSMM YTHHGLQVTF
501: TGSYHEYFGF ATDVDAVVYL MLVNDLIHGL YPEAVTIGED VSGMPTFALP VQVGGVGFDY RLHMAVADKW IELLKGNDEA WEMGNIVHTL TNRRWLEKCV
601: TYAESHDQAL VGDKTLAFWL MDKDMYDFMA LNGPSTPNID RGIALHKMIR LITMGLGGEG YLNFMGNEFG HPEWIDFPRG PQVLPSGKFI PGNNNSYDKC
701: RRRFDLGDAE FLRYHGMQQF DQAMQHLEEK YGFMTSDHQY VSRKHEEDKV IVFEKGDLVF VFNFHWSNSY FDYRVGCLKP GKYKVVLDSD AGLFGGFGRI
801: HHTAEHFTSD CQHDNRPHSF SVYTPSRTCV VYAPMN

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.