Factsheet for Solyc09g009190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G072500.34	Barley	cytosol	58.22	82.93
GSMUA_Achr5P16760_001	Banana	cytosol	36.76	82.56
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	6.16	81.82
AT5G03650.1	Thale cress	plastid	70.09	76.27
VIT_08s0007g03750.t01	Wine grape	plastid	74.09	75.55
CDX70296	Canola	plastid	70.32	73.6
Bra009521.1-P	Field mustard	plastid	70.89	72.97
CDY10367	Canola	plastid	69.63	72.88
OQU81503	Sorghum	plastid	68.61	72.67
KRH67868	Soybean	mitochondrion	71.69	72.18
CDX84127	Canola	plastid	69.18	72.06
AT2G36390.1	Thale cress	plastid	70.55	72.03
Bra005269.1-P	Field mustard	plastid	68.95	71.48
TraesCS2D01G290800.4	Wheat	plastid	67.12	71.27
CDX75040	Canola	plastid	68.72	71.24
GSMUA_Achr6P07530_001	Banana	mitochondrion	69.18	71.13
TraesCS2B01G309500.3	Wheat	plastid	67.01	70.89
TraesCS2A01G293400.1	Wheat	plastid	66.67	70.53
EES06902	Sorghum	plastid	64.04	69.86
KRG96156	Soybean	mitochondrion	69.06	69.54
Os02t0528200-01	Rice	plastid	64.73	68.73
Zm00001d016684_P005	Maize	plastid	62.33	68.0
TraesCS2B01G327300.4	Wheat	golgi	63.81	66.87
TraesCS2D01G308600.1	Wheat	plastid	63.7	66.75
HORVU2Hr1G077120.1	Barley	plastid	62.79	66.34
TraesCS2A01G310300.2	Wheat	plastid	63.13	66.31
Os04t0409200-00	Rice	plastid	17.81	61.18
CDY43722	Canola	plastid	69.63	57.82
Zm00001d003817_P002	Maize	plastid	67.58	54.51
Solyc04g082400.2.1	Tomato	plastid	47.15	48.93
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	9.02	35.59
Solyc07g064830.2.1	Tomato	nucleus	30.48	29.57

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:K4CQU8	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc09g009190.2
EnsemblPlants:Solyc09g009190.2.1	UniParc:UPI000276C4CB	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:2539818..2558047

Molecular Weight (calculated)

100174.0 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.516

Length

876 amino acids

Sequence
(BLAST)

001: MVYTLSGVRF PTVPSVYKSN GFTSSNGDRR NANVSVFLKK HSLSRKILAE KSSYDSESRP STVAASGKVL VPGTQSDSSS SSTDQFEFTE TAPENSPAST
101: DVDSSTMEQA SQIKTENGDV EPSRSTEELE FASSLQLQEG GKVEESKTLD TSEETISDES NRIREKGIPP PGLGQKIYEI DPLLTNYRQH LDYRYSQYKK
201: MREAIDKYEG GLEAFSRGYE KMGFTRSDTG ITYREWAPGA QSAALIGDFN NWDANADIMT RNEFGVWEIF LPNNVDGSPA IPHGSRVKIR MDTPSGVKDS
301: IPAWINYSLQ LPDEIPYNGI YYDPPEEERY IFQHPRPKKP KSLRIYESHI GMSSPEPKIN TYVNFRDEVL PRIKKLGYNA VQIMAIQEHS YYASFGYHVT
401: NFFAPSSRFG TPDDLKSLID KAHELGIVVL MDIVHSHASN NTLDGLNMFD GTDSCYFHSG ARGYHWMWDS RLFNYGNWEV LRYLLSNARW WLDEFKFDGF
501: RFDGVTSMMY THHGLSVGFT GNYEEYFGLA TDVDAVVYLM LVNDLIHGLF PDAITIGEDV SGMPAFCIPV QDGGVGFDYR LHMAIADKWI ELLKKRDEDW
601: RVGDIVHTLT NRRWLEKCVS YAESHDQALV GDKTIAFWLM DKDMYDFMAL DRPSTPLIDR GIALHKMIRL VTMGLGGEGY LNFMGNEFGH PEWIDFPRAE
701: QHLPDGSVIP GNQFSYDKCR RRFDLGDADY LRYHGLQEFD RAMQYLEDKY EFMTSEHQFI SRKDEGDRMI VFERGNLVFV FNFHWTNSYS DYRIGCLKPG
801: KYKVVLDSDD PPFGGFGRID HNAEYFTFEG WYDDRPRSIM VYAPSRTAVV YALVDKEEEV VVVEEVVVEE EEHVEE

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.