Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057446 | Potato | cytosol | 28.13 | 98.45 |
| VIT_19s0090g00920.t01 | Wine grape | plastid | 72.43 | 72.99 |
| AT3G20440.2 | Thale cress | plastid | 68.99 | 69.3 |
| Bra035782.1-P | Field mustard | plastid | 68.22 | 68.75 |
| CDY29828 | Canola | plastid | 68.22 | 68.75 |
| CDY54647 | Canola | plastid | 68.11 | 68.64 |
| KRG98710 | Soybean | plastid | 66.0 | 66.3 |
| GSMUA_Achr6P13530_001 | Banana | plastid | 64.23 | 63.88 |
| Os06t0367100-01 | Rice | plastid | 60.91 | 60.91 |
| TraesCS7D01G344000.1 | Wheat | plastid | 61.24 | 60.5 |
| TraesCS7B01G248000.1 | Wheat | plastid | 61.02 | 60.28 |
| TraesCS7A01G336400.1 | Wheat | plastid | 60.91 | 60.18 |
| Zm00001d011301_P001 | Maize | plastid | 59.36 | 59.62 |
| EES01041 | Sorghum | plastid | 59.8 | 59.6 |
| HORVU7Hr1G082830.1 | Barley | plastid | 47.62 | 59.47 |
| HORVU7Hr1G082850.6 | Barley | cytosol, plastid | 13.18 | 48.57 |
| Solyc09g009190.2.1 | Tomato | plastid | 29.57 | 30.48 |
| Solyc04g082400.2.1 | Tomato | plastid | 28.35 | 30.33 |
| Zm00001d033399_P001 | Maize | endoplasmic reticulum, vacuole | 0.89 | 6.84 |
Protein Annotations
| KEGG:00500+2.4.1.18 | Gene3D:2.60.40.10 | Gene3D:2.60.40.1180 | MapMan:3.2.2.5 | Gene3D:3.20.20.80 | InterPro:A-amylase/branching_C |
| InterPro:Branching_enzy | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003844 | GO:GO:0004553 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 |
| GO:GO:0005978 | GO:GO:0006091 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016787 |
| GO:GO:0043169 | InterPro:Glyco_hydro_13_N | InterPro:Glyco_hydro_13_cat_dom | InterPro:Glyco_hydro_b | InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Ig_E-set | UniProt:K4CHG2 | PFAM:PF00128 | PFAM:PF02806 |
| PFAM:PF02922 | PIRSF:PIRSF000463 | PANTHER:PTHR43651 | PANTHER:PTHR43651:SF4 | SMART:SM00642 | SUPFAM:SSF51011 |
| SUPFAM:SSF51445 | SUPFAM:SSF81296 | EnsemblPlantsGene:Solyc07g064830.2 | EnsemblPlants:Solyc07g064830.2.1 | UniParc:UPI000276C832 | SEG:seg |
Description
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT3G20440) UniProtKB/Swiss-Prot;Acc:D2WL32]
Coordinates
chr7:+:66815412..66830350
Molecular Weight (calculated)
103945.0 Da
IEP (calculated)
6.853
GRAVY (calculated)
-0.500
Length
903 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLSDSLRI SSPLSDSRLS FLSQTGSRTS CQFKFVRSRR ARVSRCRCSA TEGPTPKRRK QIPEKYKQSE EEKGIDPVGF LSKYGITHKA FAQFLRERYK
101: SLKDLKDEIL TRHFSLKEMS TGYELMGMHR NVQHRVDFLE WAPGARYCAL IGDFNGWSTT RNCAREGHFG HDDYGYWFII LEDKLREGEE PDKLYFQQYN
201: YADDYDKGDT GITIEEIFKK ANDEYWEPGE DRFIKSRYEV AAKLYEEMFG PNGSQTEEEL EAMPDAATRY KTWKEQQKID PASNLPSYDV VDSGKEYDIY
301: NIIGDPESFK KFRMKQPPIA YWLETKKGRK GWLQKYMPAL PHGSKYRVYF NTPNGPLERV PAWANFVIPD ADGMQALAVH WEPPPEYAYK WKYKLPVKPK
401: SLRIYECHVG ISGQEPKISS FSDFISKVLP HVKEAGYNAI QIIGVVEHKD YFTVGYRVTN FYAVSSRYGT PDDFKRLVDE AHGLGLLVFL EIVHSYAAAD
501: EMVGLSLFDG TNDCYFHTGK RGHHKFWGTR MFKYGDLDVL HFLLSNLNWW VEEYHVDGFH FHSLSSMLYT HSGFASFTGD MDEYCNQYVD KEALLYLILA
601: NEVLHALHPN VITIAEDATL YPGLCDPTSQ GGLGFDYFTN LSASEMWLAL LENTPDHEWC MSKIVSTLVG DRQNTDKMLL YAENHNQSIS GGRSFAEILI
701: GNSLGKSSIS QESLLRGCSL HKMIRLITST IGGHAYLNFM GNEFGHPKRV EFPMSSNNFS FSLANRRWDL LEDDVHYRLF SFDKDMMDLD KNGRILSRGL
801: ANIHHVNDTT MVISYLRGPN LFVFNFHPVN SYERYIIGVE EAGEYQVTLN TDEKKYGGRA LLGHDQNIQR TISRRADGMR FCLEVPLPSR SAQVYKLTRI
901: LRA
101: SLKDLKDEIL TRHFSLKEMS TGYELMGMHR NVQHRVDFLE WAPGARYCAL IGDFNGWSTT RNCAREGHFG HDDYGYWFII LEDKLREGEE PDKLYFQQYN
201: YADDYDKGDT GITIEEIFKK ANDEYWEPGE DRFIKSRYEV AAKLYEEMFG PNGSQTEEEL EAMPDAATRY KTWKEQQKID PASNLPSYDV VDSGKEYDIY
301: NIIGDPESFK KFRMKQPPIA YWLETKKGRK GWLQKYMPAL PHGSKYRVYF NTPNGPLERV PAWANFVIPD ADGMQALAVH WEPPPEYAYK WKYKLPVKPK
401: SLRIYECHVG ISGQEPKISS FSDFISKVLP HVKEAGYNAI QIIGVVEHKD YFTVGYRVTN FYAVSSRYGT PDDFKRLVDE AHGLGLLVFL EIVHSYAAAD
501: EMVGLSLFDG TNDCYFHTGK RGHHKFWGTR MFKYGDLDVL HFLLSNLNWW VEEYHVDGFH FHSLSSMLYT HSGFASFTGD MDEYCNQYVD KEALLYLILA
601: NEVLHALHPN VITIAEDATL YPGLCDPTSQ GGLGFDYFTN LSASEMWLAL LENTPDHEWC MSKIVSTLVG DRQNTDKMLL YAENHNQSIS GGRSFAEILI
701: GNSLGKSSIS QESLLRGCSL HKMIRLITST IGGHAYLNFM GNEFGHPKRV EFPMSSNNFS FSLANRRWDL LEDDVHYRLF SFDKDMMDLD KNGRILSRGL
801: ANIHHVNDTT MVISYLRGPN LFVFNFHPVN SYERYIIGVE EAGEYQVTLN TDEKKYGGRA LLGHDQNIQR TISRRADGMR FCLEVPLPSR SAQVYKLTRI
901: LRA
001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI
Arabidopsis Description
SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.