CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00920.t01	Wine grape	plastid	71.08	71.32
PGSC0003DMT400057446	Potato	cytosol	20.02	69.77
AT3G20440.2	Thale cress	plastid	68.08	68.08
CDY29828	Canola	plastid	67.19	67.41
Bra035782.1-P	Field mustard	plastid	67.07	67.3
CDY54647	Canola	plastid	66.74	66.96
Solyc07g064830.2.1	Tomato	nucleus	66.3	66.0
KRH51616	Soybean	cytosol, mitochondrion, vacuole	24.47	33.43
KRH67868	Soybean	mitochondrion	29.03	30.0
KRG96156	Soybean	mitochondrion	28.7	29.66
KRH60937	Soybean	plastid	28.25	28.29
KRH56220	Soybean	cytosol	1.22	14.47

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100780600	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80
InterPro:A-amylase/branching_C	EMBL:ACUP02010916	InterPro:Branching_enzy	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G092600	GO:GO:0003674
GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009791
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:K7MQT1	EnsemblPlants:KRG98710	ProteinID:KRG98710	ProteinID:KRG98710.1	PFAM:PF00128	PFAM:PF02806
PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF4	MetaCyc:PWY-5067	MetaCyc:PWY-622
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI000233F13E	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:9305015..9321777

Molecular Weight (calculated)

103498.0 Da

IEP (calculated)

6.488

GRAVY (calculated)

-0.529

Length

899 amino acids

Sequence
(BLAST)

001: MSSTLSIPLG FCFPPTVATS FPHSQTKPQN VTFQRRKTTT KACAASENPN QRQNPKQNQK EAKTKNAGDD DGEKGINPAG FLAKRGISHK AFAQFLRERY
101: KVLKDMKDEI LKRHENFMIL ASGFELLGMH RHPEHRVDYM EWAPGARYCA IIGDFNGWSP TEDCAREHYF GHDDFGYWFI ILQDKLREGE EPDKYYFQMY
201: NYVDDYDKGD SGVSVEELIK KANEKYWQPG EDRFVNNRFE GPVKLYEQIF GPNGPQTIED IPDIPDPETR YKAWAAEHGP SPTAAIDSGK EYDIYNVIVD
301: PQWQEKIRAL EPPVLYWFET RKGRKAWMKK YSPGIPHGSK YRVYFNTANG PLERVPAWAT YVQPEVDGRQ ACAIHWEPSP EQAYKWKNMS PKVPKSLRIY
401: EAHVGISGSE PKISSFNDFT DKVLPYIKEA GYNAIQLIGI VEHKDYFTVG YRVTNFFAVS SRYGTPEDFK RLVDEAHGLG LLIILEIVHS YAAADEMVGL
501: SMFDGSNDCF FRSGKRGQHK FWGTRMFKYG DPDVLHFLLS NLNWWIVEYQ IDGFQFHSVS SMMYTHNGFA SFTGELEEYC NQYVDKDALV YLILANEILH
601: SLHPNIITIA EDATFYPGLC EPTSQGGLGF DYYVNLSVPD MWSTFLESVP DHEWSMTKIV NTLVSNREHA DKMLMYAENH NQSISGRRSF AEILFGEIDE
701: NSNHYKESLL RGSSLHKIIR LITLTIGGRA YLNFMGNEFG HPKRVEFPTS SNNNSYLLAN RQWDLLTKDG VHRDLFAFDK DMMKLDENVK VLSRNIPNIH
801: HVNDSSMVIS YIRGPLLFIF NFHPKDSYDS YSIGVEEAGE YQIILNTDEI KYGGQGILKE EQYFLKTISR RVDGLRNCLE VSLPSRTSQV YKLRRILRI

Best Arabidopsis Sequence Match ( AT3G20440.2 )
(BLAST)

001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI

Arabidopsis Description

SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.